Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a11
         (894 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...    88   1e-17
BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro...    29   6.5  
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    29   6.5  
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P...    29   6.5  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score = 88.2 bits (209), Expect = 1e-17
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
 Frame = -1

Query: 294 YTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQRARKFFFRG 118
           YTVPH S + V+ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT   R   F FRG
Sbjct: 9   YTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRSRLNTFLFRG 68

Query: 117 FPIGLGLTVITVALDKFMGGGE 52
             +G    + TVA++  +G G+
Sbjct: 69  LGVGFCAFLATVAVEYALGIGK 90


>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p
           protein.
          Length = 1482

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 11  KSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNPL 124
           K+  LP A   A    PPIN    T +  +P  + +PL
Sbjct: 304 KNFGLPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 341


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  FIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 195
           + Q+H   C+ Q+  K+  E+   + PAS+  RV  P L+ D
Sbjct: 212 WFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
           isoform C protein.
          Length = 1868

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 11  KSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNPL 124
           K+  LP A   A    PPIN    T +  +P  + +PL
Sbjct: 302 KNFGLPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 339


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,508,968
Number of Sequences: 53049
Number of extensions: 620358
Number of successful extensions: 1493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)