Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a11
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   5.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 304 WAPVHSASLLPVYCQ 260
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 304 WAPVHSASLLPVYCQ 260
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -1

Query: 171 HPGFGTRWQRARKFFFR--GFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAIDFV 7
           HPGF  +  RAR+ F     F    G  + TV   +     E   W+R     +D V
Sbjct: 199 HPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTE----TETETWTRVFNTLVDLV 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,570
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)