Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a08
         (905 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA520 Cluster: hypothetical protein TTHERM_0067...    33   7.6  
UniRef50_Q0QLC8 Cluster: Putative uncharacterized protein; n=2; ...    33   7.6  

>UniRef50_UPI00006CA520 Cluster: hypothetical protein
           TTHERM_00678500; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00678500 - Tetrahymena
           thermophila SB210
          Length = 507

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 141 NLKVRIMLILQETMKSLFY*HQLGYKCTNR-EWVCNRMIQTIKYHSRNYYTNHIHSQLQS 317
           NLKV   L LQ+  +S    +QL  KC  R E   +  IQ   YH ++   N +H+Q++ 
Sbjct: 174 NLKVESQL-LQQAYESNPCINQLNNKCEKRKEGFVDVKIQIKNYHDQSIKLNQLHNQIKE 232

Query: 318 CN 323
            N
Sbjct: 233 TN 234


>UniRef50_Q0QLC8 Cluster: Putative uncharacterized protein; n=2;
           Candidatus Phytoplasma australiense|Rep: Putative
           uncharacterized protein - Candidatus Phytoplasma
           australiense
          Length = 155

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 567 LNF*YLLIVVMTFISFLKYVHKIFNIAEDKVIILPFRFELVSIRTF*F 424
           +NF   L  ++ FI+FL  +  IFNI +  + I+ F F+++ I  F F
Sbjct: 55  INFILSLFYILIFITFLVLLGSIFNIIKTTIKIIFFPFKILFIGVFKF 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,036,863
Number of Sequences: 1657284
Number of extensions: 14234671
Number of successful extensions: 23498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23487
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)