Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a07
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   219   3e-58
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   219   3e-58
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    30   0.31 
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.42 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.55 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.73 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.9  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.1  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   9.0  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  219 bits (535), Expect = 3e-58
 Identities = 100/173 (57%), Positives = 132/173 (76%)
 Frame = -3

Query: 593 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 414
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 413 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 234
            R+RK   A+R GRH G+GKR+GTA ARMP   +W              R + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 233 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 75
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR + K AR+RR
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  219 bits (535), Expect = 3e-58
 Identities = 100/173 (57%), Positives = 132/173 (76%)
 Frame = -3

Query: 593 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 414
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 413 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 234
            R+RK   A+R GRH G+GKR+GTA ARMP   +W              R + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 233 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 75
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR + K AR+RR
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 176 EYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREETYCR 57
           +Y+ +      R K L+  A  +R+K+ E +KRR+E   R
Sbjct: 127 QYMAQSTRRSTRDKPLTSAAAGKRDKLTELKKRRQERSAR 166


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 391 SVFLRTRAREWTATGFLMTRPSLIILRMFC 480
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 450 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 539
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 471 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 566
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 623 LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 465
           +V VG +  ++ S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 164 RKKAEKARTKMLSDQAEARRNKVKEARKRREETYCRQE 51
           R++AE+   +      EA+R +  EARK+REE   ++E
Sbjct: 614 RREAERLAEQAAQKALEAKRQE--EARKKREEQRLKRE 649


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 611 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 498
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 194 NKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREET 66
           NK++  E    K+A +   +      +   N+VKEARK +EE+
Sbjct: 291 NKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKEES 333


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 VPSVAYAHWQYLFSYQS 364
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 246
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = -3

Query: 533 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 387
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 386 RRKGR 372
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 479 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 363
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 197 KNKRVLMEYIHRKKAEKART-KMLSDQAEARRNKVKEARK 81
           K   V+ +  HRK A  A     L+DQ++A +N+V + RK
Sbjct: 224 KGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRK 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,753
Number of Sequences: 5004
Number of extensions: 53518
Number of successful extensions: 193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)