Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a07
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   239   9e-64
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    29   2.7  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    29   3.6  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   4.8  
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical...    28   6.3  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.3  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  239 bits (586), Expect = 9e-64
 Identities = 109/175 (62%), Positives = 139/175 (79%)
 Frame = -3

Query: 593 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 414
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 413 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 234
            R R+  EARRKGRH G+GKRRGTANARMP+K LW              R AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 233 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 69
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQA+ARR+K KE+RKRREE
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREE 175


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 161 KKAEKARTKMLSDQAEARRNKVKEARKRREET 66
           KKAEK +++++  QAEA++N  K    R++ET
Sbjct: 132 KKAEKVKSELVVPQAEAQKNTPKSVVARKKET 163


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 497  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 363
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -3

Query: 254  KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 75
            K+++    +   K K    +NK  +     R KAE+ + K+  ++ +A   K+K A + R
Sbjct: 938  KVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEER 997

Query: 74   EE 69
             +
Sbjct: 998  RK 999


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 485 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 372
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
            protein Y39B6A.18 protein.
          Length = 1352

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 218  KAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 69
            K K    +NK  +     R KAE+ + K+  ++ +A   K+K A + R +
Sbjct: 911  KVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERRK 960



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 188  RVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREETYCRQE 51
            R + E   R KAE+ + K   ++ +A   KVK  ++R +E    +E
Sbjct: 882  RAIKEEEERVKAEREKVKKEEERLKAEEEKVKVEKERNKEKVKAEE 927


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/95 (26%), Positives = 37/95 (38%)
 Frame = +1

Query: 49  PSWRQYVSSRRLRASFTLLRRASAWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*S 228
           PSW   ++     + F +        LSI  LAFS  F   YS    L++ TL   F  S
Sbjct: 77  PSWNLLIALAVCDSLFLIFATLDVTPLSIPSLAFSTSFNHFYSRIV-LYIRTLASTFYKS 135

Query: 229 EWYRCLSIFLAVLYFRSNFLRTLCLCTHSSFCGIR 333
                 S+ + V +    +L  +C      +C  R
Sbjct: 136 ------SVLIVVAFNIERYLCVVCPLNSHRWCTSR 164


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 233 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 69
           H+   + +GNV K +       H K  +KAR+ +  ++   +  K+KE  K++E+
Sbjct: 80  HAATHEVQGNVTKKRTK-----HSKTRQKARSSVTLEKLAQKNQKMKEELKKQED 129


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 233 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 69
           H+   + +GNV K +       H K  +KAR+ +  ++   +  K+KE  K++E+
Sbjct: 188 HAATHEVQGNVTKKRTK-----HSKTRQKARSSVTLEKLAQKNQKMKEELKKQED 237


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 221 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREETYCRQE 51
           +K K    K K   +E   RKK  K + +   D  ++  +  +E RKR++    ++E
Sbjct: 135 LKKKAKKEKKKAKKLEKKERKKERKEKRRRRDDSDDSSDSDEEEDRKRKKSKESKKE 191


>AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical
           protein Y41D4B.11 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 197 KNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREETYCRQE 51
           K + +  +Y   + AEK + +    + E   NK+KEARK+RE+   R E
Sbjct: 125 KQEEIDADYKIIEDAEKRKKEQEKREIE---NKIKEARKKREQEARRLE 170


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 415
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -3

Query: 263 TAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAR 84
           T+KK +      L   A     + KR   +  H K+ +K + +    Q E  R K  E  
Sbjct: 88  TSKK-EEDKRKELEATAAAKEHEEKRRKEKEEHEKELQKEKEREKERQRERDREKRAEEE 146

Query: 83  KRREE 69
           KRREE
Sbjct: 147 KRREE 151


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 209 GNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 69
           G  FK        +H  K  ++  +++SD   A    +KEARK  E+
Sbjct: 482 GETFKFPAKFRRILHTSKTVRSVLEVVSDPENAEFLSIKEARKTVED 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,574
Number of Sequences: 27780
Number of extensions: 324167
Number of successful extensions: 1163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)