Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a06
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   7.1  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    26   9.4  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan ...    26   9.4  

>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 EGSVFSHTVINCFHHNMMTGFISEIENNI 345
           E S+  + + +C+H N+    +S I NN+
Sbjct: 823 ENSLTINVIDSCYHENIQNHVLSSINNNL 851


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 YSCGFYLLNCQRHLPRFSNNQ 190
           + CGF +L+  +HL RF  N+
Sbjct: 141 FLCGFKILHTFKHLARFEENE 161


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  N*RSTSTIAVSLKYINSSILLVWFLS 147
           N R T  + V  KY NSS+  +W +S
Sbjct: 551 NSRETRAVEVLEKYFNSSMSRIWLIS 576


>AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan
           protein 2 protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 331 IENNIYSVL*KCKGMFLYEKPTC*TS 408
           ++N ++S + +CKG+F   +PT  TS
Sbjct: 295 VKNAMFSAIGQCKGVFSSPRPTTRTS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,978
Number of Sequences: 27780
Number of extensions: 216884
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)