Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a04
         (490 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    26   0.60 
AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    25   1.1  
CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    23   4.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.4  
AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding pr...    22   9.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    22   9.8  

>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 251 HLLESRLSPRSSVGANVMELHLHISAGHQAVLHARL 144
           HL         S+G   M LH H   GH A LHA L
Sbjct: 329 HLSHLHQMSAMSMGMGSMGLHHH-HPGHHAALHAHL 363


>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 265 YLHSLTCWSQDCHQ 224
           YLH L  W   CHQ
Sbjct: 549 YLHGLVSWGYGCHQ 562


>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 348 LVKTARFKELAPYDPDWFYV 289
           +V   RF+++A   PDW +V
Sbjct: 161 VVSNDRFRDVASEHPDWAFV 180


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 108 VQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQPS 4
           + DGGRI +  G RD          K  QQ ++ S
Sbjct: 283 ISDGGRIRSGDGGRDSRGGGVDAAKKQHQQQQRSS 317


>AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding
           protein AgamOBP38 protein.
          Length = 336

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 335 LASKSWLRMTLIGSMCVVL 279
           L  ++WL + L+G+ C ++
Sbjct: 2   LTYRAWLLLALLGAQCALI 20


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 322  LFEASCLYKIHVLRY 366
            +F + CL KI  LRY
Sbjct: 1665 IFSSECLMKIFALRY 1679


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,452
Number of Sequences: 2352
Number of extensions: 9562
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)