Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a03
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar prote...    29   5.9  

>M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar protein
           protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 602 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 429
           DS  +Q +V  H    Q +  H HH+Q  Q H+ A  Q   Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQHQQAALQ---QYIVQQQQLLRFERERERE 151

Query: 428 RVRLQNRRPH 399
           R R   R  H
Sbjct: 152 REREHYRERH 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,538,610
Number of Sequences: 53049
Number of extensions: 652930
Number of successful extensions: 1948
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)