Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a02
         (825 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   2.1  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   4.9  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   6.5  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   8.6  
AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F pro...    23   8.6  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 747 YLHCG-HSCLCTDCDETVNVDNTCPKC 670
           Y + G H C   +CDE  ++DNT P C
Sbjct: 433 YFNFGPHGCQPCNCDERGSLDNT-PSC 458


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 327  FNVLCKQELCKAVAARG*HLHYTTATC*NV 238
            FN L +QELCK     G  +H T A   NV
Sbjct: 2117 FNALQRQELCKKFVEIG-KVHLTWAILKNV 2145


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -1

Query: 744 LHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVG 592
           L  GH  L  DC   V+    C +C +   Y     +    A  NG  R+G
Sbjct: 394 LERGH--LARDCQSPVDRQQACIRCGADGHYAKSCTSEIKCAACNGPHRIG 442


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 632 CNMLPYEMVISVLVYLSPAQILNL 561
           CN LP EMV+      +P +I  L
Sbjct: 409 CNTLPNEMVLDSRTASTPVEICEL 432


>AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F
           protein.
          Length = 101

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 754 RYLSALRTFVFVHRLRRNGKRGQYVS 677
           RYL  L T    H   R GKRG Y++
Sbjct: 45  RYLQELETKHAQHARPRFGKRGGYLN 70


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,552
Number of Sequences: 2352
Number of extensions: 16435
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87734433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)