Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p21
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   2e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   1.5  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   1.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   1.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   2.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   4.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   4.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    23   5.9  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    23   5.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    23   5.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   7.8  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    23   7.8  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    23   7.8  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 81.4 bits (192), Expect = 2e-17
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = -3

Query: 201 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARA 22
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q   +
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQAKAS 60

Query: 21  A 19
           A
Sbjct: 61  A 61


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 201 MAKSKNHTNHNQNRKAHRNGIKKPRK 124
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 170 TKTAKLTEMVSKSQGRPGTN 111
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 215  ENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 87
            E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 999  EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 183 HTNHNQNRKAHRNGIKKPRKTRHES 109
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 66  KTFDSLKILDPCQGWIRAWSSLAF*YHFC 152
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 197 QSQRIIQIITKTAKLTEM--VSKSQGRPGTNPPLAWIQ-NF*GIKGFARRVT*SQPSNSR 27
           Q++ II  ++ +A L+E+  +S+S    G+     +I  N   I+ F+  +T   P NS+
Sbjct: 797 QAESIISSLSSSA-LSELSYISESSMNIGSRLDERFIDANGVAIRDFSAELTYLTPENSK 855

Query: 26  GRL 18
           G+L
Sbjct: 856 GKL 858


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 12  FSQPPSRVAWLASGY 56
           FSQPP R A   SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 147 NGIKKPRKTRHESTLGM 97
           NGIK+  KTRH S + +
Sbjct: 38  NGIKRGLKTRHVSMMAL 54


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 189 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 46
           K H+ +  ++K+++NG KK RK   +S        LR  R     N+K
Sbjct: 178 KTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 186 NHTNHNQNRKAHRNGIKKPRKTRHESTLGM 97
           +H NH+++RK +   +    +T H   L +
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAV 879


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 75   DSLKILDPCQGWIRAWSSLAF*YH 146
            +S K+     GWI +W  LA   H
Sbjct: 1199 ESAKLAFSLHGWINSWYLLALVMH 1222


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 124 LPWLFDTISVSFAVLVMICMIL*LCHFDAFSIHLDSE 234
           +PWL  TI     + +M   ++  C+F  F +  +++
Sbjct: 257 IPWLSFTIYRGIGISLMRSALINSCNFTLFELFRETK 293


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -1

Query: 242 VLSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 108
           V  S  + + +A + ++Q+ + +    ++L E+++     PG NP
Sbjct: 183 VFKSSFQGLMDAFQLRAQKQMTLSYYASQLAELINDEVAYPGDNP 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,837
Number of Sequences: 5004
Number of extensions: 18068
Number of successful extensions: 60
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)