Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p21
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical pr... 78 7e-16
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 57 2e-09
AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical ... 44 1e-05
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 1.0
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 1.0
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 1.0
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 1.0
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 1.0
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 28 1.0
AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger t... 28 1.0
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 28 1.0
AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical ... 27 1.3
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 27 1.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 1.8
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 1.8
U41110-5|AAA82420.2| 250|Caenorhabditis elegans Hypothetical pr... 27 2.3
U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 25 5.4
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical... 25 5.4
Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z48055-7|CAO78722.1| 452|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 7.1
U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical pr... 25 7.1
U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 25 7.1
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 25 7.1
AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein. 25 7.1
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68493-2|CAA92786.1| 71|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 25 9.4
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 25 9.4
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 25 9.4
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 25 9.4
AF026202-3|AAB71244.1| 156|Caenorhabditis elegans Hypothetical ... 25 9.4
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 25 9.4
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z82256-2|CAB05115.1| 62|Caenorhabditis elegans Hypothetical
protein B0513.3 protein.
Length = 62
Score = 78.2 bits (184), Expect = 7e-16
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = -3
Query: 201 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARA 22
MAKSKNHTNHNQN+KAHRNGI KP+K S G+D KF++N RF +K N +Q+ ++
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN---KRQINKS 57
Query: 21 AERKA 7
E KA
Sbjct: 58 VESKA 62
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 56.8 bits (131), Expect = 2e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = -3
Query: 195 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 52
K +NHTNHN+N KAHRNGI KP+K S G +F+++ RF +K N
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61
>AL032625-6|CAN86641.1| 167|Caenorhabditis elegans Hypothetical
protein Y37H9A.5 protein.
Length = 167
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -3
Query: 195 KSKNHTNHNQNRKAHRNGIKKPR 127
KSKNHTNHNQN AHR GI KP+
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
protein T05A10.1c protein.
Length = 1692
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 283 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 320
>AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 781
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 305 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 342
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 239 LSSESKWIENASKWQSQRIIQII-TKTAKLTEMVSKSQ 129
+ SE +++ENA ++Q++ IIQ + ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694
>AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical
protein Y119C1B.3 protein.
Length = 450
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 213 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 70
K+ K A + NH N ++N NG + P+KTR S T PK R+ R
Sbjct: 376 KKSKKAAAANHKNASRN-----NGNETPKKTRRSSSTTPTRTPKQRRSSR 420
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 162 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 61
+K HR+ +KK R+ RH + P + R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 141 YHFCELCGFGYDLYDSL 191
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 141 YHFCELCGFGYDLYDSL 191
Y+FC++CGFG DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701
>U41110-5|AAA82420.2| 250|Caenorhabditis elegans Hypothetical
protein ZK682.7 protein.
Length = 250
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -3
Query: 213 KRIKMAKSKNH-TNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAK 37
KR ++KS+ T+ R +G++ P R T + PK L N+ + P+K
Sbjct: 44 KRKALSKSQRELTDFVNGRNGDPHGLRLPLPIRSSLTDLVKPKLLENRNYQPPRRKTPSK 103
Query: 36 QLARAAERKATR 1
AE + +
Sbjct: 104 DHHSKAEENSKK 115
>U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical
protein K01A12.3 protein.
Length = 496
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 213 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 76
KR + H HN +++++ G+K R + D F+RN
Sbjct: 363 KRRSSHPFRMHGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 144 GIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARAAERKATR 1
G KKP+ +R G +P+ + KKG K + A A +R
Sbjct: 40 GSKKPKPSRGNDEKGREPETSAQSKKAKKGKPKRDSKAATPALSPGSR 87
>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
protein Y110A7A.16 protein.
Length = 1250
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 245 SVLSSESKWIENASKWQSQRIIQIIT 168
+VLS +W+EN SQ I+ +IT
Sbjct: 1146 NVLSENYRWLENIGNELSQLILVLIT 1171
>Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical
protein F13D12.6 protein.
Length = 454
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 137 KSQGRPGTNPPLAWIQNF*GIKGFARRVT*SQPSN 33
+SQ P T+P L W+ G G + +T P N
Sbjct: 58 ESQSNPSTDPVLLWLTGGPGCSGLSALLTEWGPWN 92
>Z48055-7|CAO78722.1| 452|Caenorhabditis elegans Hypothetical
protein T07A5.7 protein.
Length = 452
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 213 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 115
+R K A KN N+N N+K+ +K+ + H
Sbjct: 207 QRRKEANKKNSKNYNFNKKSKEAKLKEDLEKNH 239
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LFSQPPSRVAWLASGYP 59
++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LFSQPPSRVAWLASGYP 59
++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LFSQPPSRVAWLASGYP 59
++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LFSQPPSRVAWLASGYP 59
++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425
>U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical
protein F59A6.10 protein.
Length = 155
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 21 PPSRVAWLASGYPSCKTF 74
PPS+ L +G PSCK F
Sbjct: 117 PPSQKCELENGKPSCKKF 134
>U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 19
protein.
Length = 944
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -3
Query: 219 D*KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPA 40
D +R+ SKN+ ++ + + + P +TRH+ + +D + + ++
Sbjct: 777 DTQRLNKVLSKNNIGELESPRLNGTRVLSPPRTRHQISNAIDSDAFNDMPVLTQEPVQER 836
Query: 39 KQLARAAE--RKAT 4
+ +A+ E RK T
Sbjct: 837 RMIAQVFEIPRKTT 850
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 87 FLRNQRFCKKGNLK 46
FLRN R+ K GNLK
Sbjct: 353 FLRNARYSKHGNLK 366
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 9 LFSQPPSRVAWLASGYP 59
++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425
>AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein.
Length = 323
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 236 SSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPL 102
S E + +EN+ ++Q Q+ + I ++ T S G ++PPL
Sbjct: 130 SMEKQNMENSFRYQRQQSVPISSRRMSNTSNTSSVFGLKYSSPPL 174
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 144 GIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 31
G+K+PR T S K +R + F K N+K ++ L
Sbjct: 1018 GVKRPRSTSTSSPGPSASKSVRTEVFKKTPNVKESQVL 1055
>Z68493-2|CAA92786.1| 71|Caenorhabditis elegans Hypothetical
protein C33A12.2 protein.
Length = 71
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 98 MPRVDSCLVFLGFLIPFL 151
MPRV S +VFL F++ L
Sbjct: 1 MPRVSSFIVFLTFMVALL 18
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 150 RNGIKKPRKTRHESTLGMDPKFLR 79
R+GI+ P +T +TLG D KF +
Sbjct: 99 RDGIRTPFETVTLTTLGSDVKFFK 122
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 150 RNGIKKPRKTRHESTLGMDPKFLR 79
R+GI+ P +T +TLG D KF +
Sbjct: 145 RDGIRTPFETVTLTTLGSDVKFFK 168
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 213 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 106
KRI S+N Q+R R + PR R +T
Sbjct: 133 KRISPPPSENREKEKQSRDKERRRSRSPRDRRGRAT 168
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 144 GIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 31
G+K+PR T S K +R + F K N+K ++ L
Sbjct: 1018 GVKRPRSTSTSSPGPSASKSVRTEVFKKTPNVKESQVL 1055
>AF026202-3|AAB71244.1| 156|Caenorhabditis elegans Hypothetical
protein C10E2.4 protein.
Length = 156
Score = 24.6 bits (51), Expect = 9.4
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = -1
Query: 236 SSESKWIENASKWQSQRI 183
S+E +W+ + KWQ++++
Sbjct: 54 SAEEQWLAHGEKWQNEQL 71
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 121 GLPWLFDTISVSFAVLVMI 177
GLPWLF V F +L ++
Sbjct: 21 GLPWLFSVFVVLFLLLTIL 39
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 121 GLPWLFDTISVSFAVLVMI 177
GLPWLF V F +L ++
Sbjct: 21 GLPWLFSVFVVLFLLLTIL 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,619,932
Number of Sequences: 27780
Number of extensions: 100118
Number of successful extensions: 406
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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