Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p21
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.33 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   4.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   5.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    19   7.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    19   7.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    19   7.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    19   7.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    19   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    19   7.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   9.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.33
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 195 KSKNHTNHNQNRKAHRNGIKKPRKTRH 115
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 207 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTL--GMDP 91
           I + +  +HT +  +    RNG K P       T+   MDP
Sbjct: 140 ISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDP 180


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 126 KTRHESTLGMDPKFL 82
           + RH STL +D K L
Sbjct: 239 ENRHSSTLDIDHKML 253


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRN 145
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRN 145
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 162 RKAHRNGIKKPRK 124
           ++AHR GI  P+K
Sbjct: 446 QRAHRLGIDTPKK 458



 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNG 142
           + N+ N+N N   + NG
Sbjct: 237 ASNNNNNNNNNNNNNNG 253


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 NHTNHNQNRKAHRN 145
           N+ N+N N+K + N
Sbjct: 98  NYNNNNYNKKLYYN 111


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 NHTNHNQNRKAHRN 145
           N+ N+N N+K + N
Sbjct: 98  NYNNNNYNKKLYYN 111


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 NHTNHNQNRKAHRN 145
           N+ N+N N+K + N
Sbjct: 98  NYNNNNYNKKLYYN 111


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 186 NHTNHNQNRKAHRN 145
           N+ N+N N+K + N
Sbjct: 98  NYNNNNYNKKLYYN 111


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/45 (20%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKK 58
           + +H +  ++    RN   + +  R+E       K L  +  CK+
Sbjct: 227 TSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKR 271


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/45 (20%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKK 58
           + +H +  ++    RN   + +  R+E       K L  +  CK+
Sbjct: 227 TSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKR 271


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/45 (20%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKK 58
           + +H +  ++    RN   + +  R+E       K L  +  CK+
Sbjct: 227 TSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKR 271


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/45 (20%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKK 58
           + +H +  ++    RN   + +  R+E       K L  +  CK+
Sbjct: 227 TSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKR 271


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 9/45 (20%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKK 58
           + +H +  ++    RN   + +  R+E       K L  +  CK+
Sbjct: 216 TSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKR 260


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 25  PRELLGWLQVTL 60
           PR+ LGWL + L
Sbjct: 129 PRDGLGWLLLML 140


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 207 IKMAKSKNHTNHNQNRKAHRN 145
           I   +  N  N N N+  H N
Sbjct: 578 IMNTRCANSDNQNNNQNKHNN 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,368
Number of Sequences: 438
Number of extensions: 1342
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)