Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p19
(210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0114 + 6753868-6754126,6754225-6754592,6754704-6754992,675... 29 0.68
06_01_0169 - 1346281-1349188,1350069-1350184 27 2.1
02_04_0311 + 21936812-21937861 26 3.6
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 26 4.8
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 26 4.8
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 26 4.8
03_02_0521 - 9093932-9094252 26 4.8
08_02_1040 - 23873354-23874509,23875645-23875796 25 6.3
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 25 6.3
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 25 8.4
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 25 8.4
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 25 8.4
>05_02_0114 +
6753868-6754126,6754225-6754592,6754704-6754992,
6755838-6755909,6757440-6757666
Length = 404
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 8 PPFANKR*HDFGGGG*FQIAIV 73
PPF K +DFGGGG AIV
Sbjct: 96 PPFLAKEANDFGGGGGANFAIV 117
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 199 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 92
+ C + IM+ S S NF+YS +N+ VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528
>02_04_0311 + 21936812-21937861
Length = 349
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 11 PFANKR*HDFGGGG*FQIAIVIAVRIGNDD 100
P+A R H GGGG + A+ + V DD
Sbjct: 106 PYAEVRKHRSGGGGALECAVCLTVFDDGDD 135
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 169 KTDAQSTSNTHNFMYSPDNNLEVVII 92
K+ S S+ +NF++SPD+N ++
Sbjct: 310 KSYITSPSDLNNFLFSPDSNFRQTVV 335
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 51 PPPPKSCHLL 22
PPPP+ CHLL
Sbjct: 71 PPPPRRCHLL 80
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 70 DGYLELTAAAKIMSPFISKRR 8
DG L+L AAKI+ ++ KRR
Sbjct: 114 DGILDLNDAAKILDVWVRKRR 134
>03_02_0521 - 9093932-9094252
Length = 106
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 208 RLFLSGCYKNGIMKTDAQSTSNTHNF--MYSPDNNLEVVIITNSDGDHDG 65
RL G K+G+ + A + ++ + M SP L V+I ++DG H G
Sbjct: 11 RLPRRGREKSGLPRKTASTLPSSPSLGPMSSPTRELPGVVILDNDGFHSG 60
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 187 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 71
Y G M+ D + + + + PD EV +I+ D DH
Sbjct: 145 YLIGRMQMDGEEIAVVSSPLVEPDTIAEVPVISMDDDDH 183
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 38 FGGGG*FQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGV 163
+GGGG + ++ G D H +V R E VRV +GV
Sbjct: 412 YGGGGGAMTRAIGSLMHGGDQHAGVVDRRRGEGVRVVDYMGV 453
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 164 GRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSR 69
GR Q+H SR+ G HH Q ++R
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGRHHQQVAPKAR 181
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 11 PFANKR*HDFGGGG 52
PFA++R H+ GGGG
Sbjct: 346 PFASRRGHEGGGGG 359
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -3
Query: 178 GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFIS 17
G+MK +A TS + N I+ N + YL+L + M F S
Sbjct: 93 GVMKNEAMGTSQGSTVLCYHYNFCHFYILENLSNRYSPYLQLMCWGRYMHYFQS 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,241,696
Number of Sequences: 37544
Number of extensions: 139684
Number of successful extensions: 371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -