Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p17
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein. 258 2e-68
BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase (ubi... 258 2e-68
BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein. 257 3e-68
AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone oxidore... 257 3e-68
AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone oxidore... 257 3e-68
AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS... 257 3e-68
AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens ... 215 1e-55
AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein. 169 1e-41
AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein. 153 7e-37
>BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein.
Length = 213
Score = 258 bits (631), Expect = 2e-68
Identities = 128/205 (62%), Positives = 152/205 (74%)
Frame = -1
Query: 703 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 524
++ + LG S + L+ +GV V + + PA + R +P S+ E
Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63
Query: 523 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 344
VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA
Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123
Query: 343 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGC 164
GTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPVDIY+PGC
Sbjct: 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGC 183
Query: 163 PPTAEALLYGVLQLQKKIKRMKTIQ 89
PPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 184 PPTAEALLYGILQLQRKIKRERRLQ 208
>BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q
reductas protein.
Length = 213
Score = 258 bits (631), Expect = 2e-68
Identities = 128/205 (62%), Positives = 152/205 (74%)
Frame = -1
Query: 703 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 524
++ + LG S + L+ +GV V + + PA + R +P S+ E
Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63
Query: 523 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 344
VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA
Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123
Query: 343 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGC 164
GTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPVDIY+PGC
Sbjct: 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGC 183
Query: 163 PPTAEALLYGVLQLQKKIKRMKTIQ 89
PPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 184 PPTAEALLYGILQLQRKIKRERRLQ 208
>BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein.
Length = 208
Score = 257 bits (630), Expect = 3e-68
Identities = 117/152 (76%), Positives = 131/152 (86%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 52 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 111
Query: 364 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 185
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPV
Sbjct: 112 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 171
Query: 184 DIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
DIY+PGCPPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 172 DIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 203
>AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone
oxidoreductase Fe-S protein 7 variant protein.
Length = 213
Score = 257 bits (630), Expect = 3e-68
Identities = 117/152 (76%), Positives = 131/152 (86%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 364 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 185
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPV
Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 176
Query: 184 DIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
DIY+PGCPPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 177 DIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone
oxidoreductase PSST subunit protein.
Length = 213
Score = 257 bits (630), Expect = 3e-68
Identities = 117/152 (76%), Positives = 131/152 (86%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 364 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 185
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPV
Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 176
Query: 184 DIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
DIY+PGCPPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 177 DIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS
protein.
Length = 158
Score = 257 bits (630), Expect = 3e-68
Identities = 117/152 (76%), Positives = 131/152 (86%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 2 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 61
Query: 364 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 185
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPV
Sbjct: 62 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 121
Query: 184 DIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
DIY+PGCPPTAEALLYG+LQLQ+KIKR + +Q
Sbjct: 122 DIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 153
>AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens
cDNA FLJ34850 fis, clone NT2NE2011758, highly similar to
NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR
(EC ).
Length = 213
Score = 215 bits (526), Expect = 1e-55
Identities = 101/136 (74%), Positives = 111/136 (81%), Gaps = 4/136 (2%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 64 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123
Query: 364 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPV 185
SDVMIVAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPV
Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 183
Query: 184 DIYVPG----CPPTAE 149
DIY+PG PPT E
Sbjct: 184 DIYIPGRAGTAPPTRE 199
>AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein.
Length = 214
Score = 169 bits (411), Expect = 1e-41
Identities = 103/208 (49%), Positives = 126/208 (60%), Gaps = 3/208 (1%)
Frame = -1
Query: 703 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 524
++ + LG S + L+ +GV V + + PA + R +P S+ E
Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63
Query: 523 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 344
VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA
Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123
Query: 343 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDI---YV 173
GTLTNKMAPALRK PD + G G + + P
Sbjct: 124 GTLTNKMAPALRK-SPPRPDAGAAL-RGLHGELRQRGRLLPLFLLGGEGLRPHRARGHLH 181
Query: 172 PGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
P P TAEALLYG+LQLQ+KIKR + +Q
Sbjct: 182 PRLPTTAEALLYGILQLQRKIKRERRLQ 209
>AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein.
Length = 155
Score = 153 bits (371), Expect = 7e-37
Identities = 69/81 (85%), Positives = 75/81 (92%)
Frame = -1
Query: 544 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 365
S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ
Sbjct: 64 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123
Query: 364 SDVMIVAGTLTNKMAPALRKV 302
SDVMIVAGTLTNKMAPALRKV
Sbjct: 124 SDVMIVAGTLTNKMAPALRKV 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,614,727
Number of Sequences: 237096
Number of extensions: 2560720
Number of successful extensions: 4633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4633
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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