Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p17
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical pr...   252   3e-67
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   5.0  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   5.0  
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical
           protein W10D5.2 protein.
          Length = 199

 Score =  252 bits (616), Expect = 3e-67
 Identities = 113/158 (71%), Positives = 133/158 (84%)
 Frame = -1

Query: 562 SPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVF 383
           +PF + S+ AE A+ARLDD+LN  ++GS+WP+TFGLACCAVEMMH AAPRYDMDRYGVVF
Sbjct: 37  TPFLNPSSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVF 96

Query: 382 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGC 203
           RASPRQ+D++ VAGT+TNKMAPALR++YDQMP+ +WVISMGSCAN             GC
Sbjct: 97  RASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGC 156

Query: 202 DRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQ 89
           DR++PVDIYVPGCPPTAEALLYGVLQLQKKIKR +  Q
Sbjct: 157 DRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 77  LYHTLNSFHSLDFFL*LQYTIK*SFSCRWTSGYIYVNWYNTIASSYDR 220
           L+ T  +F SL +FL        S +C+W   ++ VN+Y  + S   R
Sbjct: 42  LFKTPKNFGSLKWFLVFHIF---SITCQWLCSFLLVNFYTFVPSKITR 86


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 403 PYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPY 540
           P  ++VQQ ++    +K ++RSWA   LS+ N ++    P P + +
Sbjct: 85  PIDTDVQQPSAHPVSTKRNKRSWADNLLSAINQVACYDSPIPLMDH 130


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 403 PYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPY 540
           P  ++VQQ ++    +K ++RSWA   LS+ N ++    P P + +
Sbjct: 85  PIDTDVQQPSAHPVSTKRNKRSWADNLLSAINQVACYDSPIPLMDH 130


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 209 RMRSYCTS*HICTRMSTYS*SFTLWCTATTKKNQENENYSTCGIGTN 69
           +M SYCT+    T M T       +CT+++  +    + STC   TN
Sbjct: 62  KMASYCTNSVYLTLMKTQCPKTCGYCTSSSSTSSTTSSSSTCVDLTN 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,488
Number of Sequences: 27780
Number of extensions: 397320
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)