Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p16
(183 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 88 2e-19
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.33
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 26 0.76
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 0.76
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 0.76
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 24 2.3
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 23 4.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 4.0
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 23 4.0
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 23 5.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 23 5.3
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 5.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 7.0
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 7.0
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 22 9.3
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 22 9.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 22 9.3
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 22 9.3
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 22 9.3
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 87.8 bits (208), Expect = 2e-19
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = -1
Query: 153 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLQV 1
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.33
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 19 SPVTPLSVISNSVSCAHPYPLRNGS 93
+P TP++V S++V+ AH Y GS
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHGGS 1006
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 0.76
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 1 NLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 135
N+++ + TP +I+ + H L S L + +GQ A NNK
Sbjct: 343 NVDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 0.76
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 19 SPVTPLSVISNSVSCAHPYPL 81
+P TP S +N V CA P PL
Sbjct: 342 NPKTPQSFSTNIVQCASPSPL 362
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 0.76
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 31 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 171
P +I +S S HP PL +G VL + + NNK + + SC
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = -1
Query: 105 LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 10
+K+ +P+P+W ++ G + W R K
Sbjct: 23 VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 141 KTFIIKRKLAKKLKQNRPIPQW 76
+T +K+KL K NRP+P W
Sbjct: 18 RTITVKQKLGK----NRPLPGW 35
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 149 RPIRRLLLSANWPKS*NKTD 90
RP++ +L N PKS K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 1 NLELCPSPVTPLSVISNSVSCAHPYPLR 84
N EL P ++++NSV+ H Y L+
Sbjct: 210 NFELLPILKLFANIVANSVALTHDYSLQ 237
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 5 WSFVLLQ*RLLALYRIVFPVRIL 73
WSF +L+ AL +V P+R L
Sbjct: 1123 WSFTILKQEKKALQSLVSPIRSL 1145
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.0 bits (47), Expect = 5.3
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = -1
Query: 111 KKLKQNRPIPQWVRMRTGNTIRYNAKRR 28
+K++ +P PQW++++ + + K R
Sbjct: 76 EKMEVPKPTPQWMKLKDEGKLGKHRKNR 103
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 101 FSFLANLRLIINVLWADILNNQVV 172
+ F ++ +IIN W D N VV
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVV 279
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 103 QLFGQFALNNKRLMGRHFEQSSCQNKV 183
Q+ Q +++K LMG H E + N +
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDI 427
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 22.6 bits (46), Expect = 7.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 34 LSVISNSVSCAHPYPL 81
L++++ S C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 99 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 7
++ P+P+ RMR AK R+W K+
Sbjct: 16 EHEPVPKLFRMRLFAPNESVAKSRYWYFLKM 46
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +3
Query: 81 EEWVCFVSAFWPI 119
++W+ VS FWP+
Sbjct: 187 KQWINHVSDFWPL 199
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 132 IIKRKLAKKLKQNRPIPQWVRMR 64
+I++ +A+ K++R +PQ RMR
Sbjct: 587 VIEKAVARLKKEDRLLPQIGRMR 609
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 99 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 7
++ P+P+ RMR AK R+W K+
Sbjct: 16 EHEPVPKLFRMRLFAPNESVAKSRYWYFLKM 46
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 134 LLLSANWPKS*NKTDPFLSG 75
LL+ NW + K PF++G
Sbjct: 203 LLMDKNWDMTVQKVYPFING 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,513
Number of Sequences: 5004
Number of extensions: 11904
Number of successful extensions: 41
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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