Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p14
         (457 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.1  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   3.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.1  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   5.5  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   9.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   9.5  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 371 IQQATWQPL*CQAKTLRNPRQRSPLSTASGS 279
           I Q T   L    K+  +PR  SP ST SGS
Sbjct: 52  ISQITNSTLDPGRKSPSSPRISSPSSTKSGS 82


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 204 LRVKGPVRMPT 172
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 204 LRVKGPVRMPT 172
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -2

Query: 333 KDIEKPQAEVSPIHRIRITL 274
           +++EK + ++S +H+  +T+
Sbjct: 92  REVEKAKRDLSSVHKTTLTI 111


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 117 RSLNLHHKEFYGW 155
           + LN+   EF+GW
Sbjct: 202 KELNMIFNEFFGW 214


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 304 LPYPPHQDHSYFTQCALAR 248
           LPYP +  +SY    +LA+
Sbjct: 36  LPYPQNYINSYLFSLSLAQ 54


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 45  SVSRFQRESVGRSLSCGFSSENDPRSLNLH 134
           S  R + E        GFS  N P S++L+
Sbjct: 173 SALRLREEIKVDPFMTGFSHRNQPTSIDLN 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,962
Number of Sequences: 336
Number of extensions: 2429
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)