Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p14
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 8e-40
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 31 0.34
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 1.0
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 4.2
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 27 9.7
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9) 27 9.7
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 159 bits (387), Expect = 8e-40
Identities = 75/91 (82%), Positives = 84/91 (92%), Gaps = 2/91 (2%)
Frame = -2
Query: 267 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 94
+ VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65
Query: 93 HKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
HKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVT 96
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 262 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 149
C A GLC P + ++ + GPSP + DP+ P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 333 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 232
+ + K Q E + IH + +T ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 193 GPSPHANQDPAYHHP 149
GP PH+ Q P HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -1
Query: 298 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 149
Y P +SY CA + +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 183 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 55
R+PT + T +K PC TW R + KR + +H P+ +
Sbjct: 22 RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 366 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 244
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 7.4
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = -2
Query: 339 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 163
S + +K +VSP+ RI+ TSR ++ S DL + K K K P+ P
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183
Query: 162 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 31
P + + D ++R HKR+ D +S ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 402 FD*KVVYLGRNSTSNMAAAVVSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 244
FD K VYL RN+T+ AA+ S K+ I + QA +S + + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447
>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
Length = 198
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 355 GSRCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGL 239
GSR R RH PGR P P S+ T+ A AR GL
Sbjct: 2 GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,605
Number of Sequences: 59808
Number of extensions: 331179
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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