Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p13
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    29   3.6  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   4.8  
08_02_1368 + 26440962-26441108,26441293-26441379,26441468-264415...    28   6.4  
01_06_0659 + 30955162-30955377,30955446-30955748                       28   6.4  

>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 556 LLYQIMWPLILQFMRANAAYITLPVAALVGVIGYNLENILSDKYT 422
           ++ ++   +++QFM    +YITLP+ ALV  +G  ++  + D+ T
Sbjct: 386 IIARVCLGVVVQFM---CSYITLPLYALVSQMGSQMKRTIFDEQT 427


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +2

Query: 305 NILSEHILLIFQLLHIGWVFQYFIR*PVYTLVFDGLVIRCVFIGQYVFQVV 457
           +++ ++     Q+   G++ +Y ++   Y +VFDG+V   V I Q + +V+
Sbjct: 88  DVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVI 138


>08_02_1368 +
           26440962-26441108,26441293-26441379,26441468-26441560,
           26441755-26442000,26442097-26442315,26442653-26442808,
           26442893-26443052,26443148-26443299,26443375-26443462,
           26443533-26443588,26444952-26445026,26445184-26445270
          Length = 521

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 466 VIGYNLENILSDKYTPYNKSIEDQRVDRLTDEVL-KDPTNVKKLKYQEN 323
           ++G +   ILS+ +T       DQ+   ++D++L K  T V++LK ++N
Sbjct: 211 IMGMDPSKILSNVHTSLLDGANDQQTKNISDDILNKLNTMVQQLKEEKN 259


>01_06_0659 + 30955162-30955377,30955446-30955748
          Length = 172

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 304 KHSFRAHSPDISASSHWLGLSILHPLACL 390
           KH  R+H PD   +   LG + LH L C+
Sbjct: 51  KHISRSHPPDRQHNHSGLGTTTLHALPCV 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,242
Number of Sequences: 37544
Number of extensions: 293524
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)