Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p13
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034598-1|AAH34598.1|   92|Homo sapiens C1orf212 protein protein.     55   2e-07
AK125925-1|BAC86346.1|  623|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AK056756-1|BAB71273.1|  376|Homo sapiens protein ( Homo sapiens ...    31   4.1  

>BC034598-1|AAH34598.1|   92|Homo sapiens C1orf212 protein protein.
          Length = 92

 Score = 55.2 bits (127), Expect = 2e-07
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
 Frame = -1

Query: 541 MWPLILQFMRANAAYITLPVAALVGVIGYNLENILSDK---YTPYNKSIEDQRVDRLTDE 371
           MWP+    +R  A Y+T PVA +VG +GY+LE  +  K        KSI ++R DR  DE
Sbjct: 1   MWPVFWTVVRTYAPYVTSPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKLDE 60

Query: 370 VL-KDPTNVKKLK 335
           +L KD T V  LK
Sbjct: 61  LLGKDHTQVVSLK 73


>AK125925-1|BAC86346.1|  623|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43937 fis, clone TESTI4013924. ).
          Length = 623

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
 Frame = -1

Query: 388 DRLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKRDSCIELKIHTMIE 209
           DRLT+E+ ++    KKLK +   L K+     EK  S ++E +    ++ ++LK   +  
Sbjct: 398 DRLTEELTQNENENKKLKLKYQCL-KDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCL 456

Query: 208 KILMQQMLLII---FDFCLRSGTRNMLERCNFSTTSAEVNY 95
           +   + +L +I    D   ++ +++ +E+    ++  +++Y
Sbjct: 457 ETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHY 497


>AK056756-1|BAB71273.1|  376|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32194 fis, clone PLACE6002419, weakly similar to
           TRICHOHYALIN. ).
          Length = 376

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
 Frame = -1

Query: 388 DRLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKRDSCIELKIHTMIE 209
           DRLT+E+ ++    KKLK +   L K+     EK  S ++E +    ++ ++LK   +  
Sbjct: 44  DRLTEELTQNENENKKLKLKYQCL-KDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCL 102

Query: 208 KILMQQMLLII---FDFCLRSGTRNMLERCNFSTTSAEVNY 95
           +   + +L +I    D   ++ +++ +E+    ++  +++Y
Sbjct: 103 ETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHY 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,353,104
Number of Sequences: 237096
Number of extensions: 1766797
Number of successful extensions: 2790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2780
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)