Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p12
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.4  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   5.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   5.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   7.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 518 CQRLSHADDSCQRLSHLDDGCQRMSHLDGRCQRLSHADDGC 396
           C++L H D  C+     + G +RM + +  CQ   HA   C
Sbjct: 713 CEKLCHPDGECESSCKKECGKRRM-YCEHVCQSPCHAGHPC 752


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 NRHQHVTTAGNGHQDVTSAGNRH 466
           N H  +TT  NGH  + ++GN H
Sbjct: 303 NTHPFLTTLANGHGVMDASGNHH 325


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 817 CIVLNKYMFK*FVHKNFIMPYYFLRIKLLLV 725
           C+V  KY F+ F H + +  Y+FL + +LLV
Sbjct: 45  CVVDVKYYFEGFSH-SLLFVYFFLTLIILLV 74


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = -1

Query: 551 SGCQMSHVDDSCQRLSHADDSCQRLSHLDDGCQRMSHLDGRCQRLSHADDGCQRLSDRGS 372
           +G  +S   D  + + H D   +RL H+    Q    ++   Q  S   D   +     S
Sbjct: 307 NGFSLSKTLDDLRGIDHNDTRLKRLEHVQSELQA---VEQAIQEASAVHDAFNQRVREES 363

Query: 371 VVLSTNLESSLITAIYTYINFY 306
            +  +  +S +++AI  Y N +
Sbjct: 364 KLFDSVRQSEMLSAISDYANVH 385


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 464 HQDVTTAGNCHQHGTTAGNCHQHVTFDSRSPAVSVYGRDVTNLLPT*QLQDNFVPNLIK 640
           H DVT   N  +   + GNC   +  D     + + G      LP    +DN   N IK
Sbjct: 177 HSDVTARFN-ERFILSLGNCENCLVIDDELNVLPISGGKNVKALPPTLEEDNSTQNSIK 234


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 769  FIMPYYFLRIKLLLVQKERVLNSLSSYTNFFGLFRLKTKF 650
            F+  YY LR+   L +K+  L +L    +F GL     K+
Sbjct: 907  FLYRYYDLRVNEGLGEKQEALYNLGKAYHFIGLEHYAVKY 946


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,898
Number of Sequences: 5004
Number of extensions: 72307
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)