Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p12
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0373 - 17037945-17040641                                         32   0.66 
12_01_0527 - 4177928-4178235,4178849-4181438                           29   3.5  
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246...    29   3.5  
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381     29   3.5  
09_02_0502 + 9970516-9971028                                           29   4.7  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    29   6.2  

>09_04_0373 - 17037945-17040641
          Length = 898

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 515 QRLSHADDSCQRLSHLDDGC-QRMSHLDGRCQRLSHADDGCQRLSDRGSVVLSTNLESSL 339
           +R+  A  + + L++L  GC Q++ H D + + +  A+ G  ++SD G   L +  +S+L
Sbjct: 637 ERMEVAIGAARGLAYLHTGCEQKIVHCDVKPENILLANGGQVKISDFGLAKLMSREQSAL 696

Query: 338 ITAI 327
            T +
Sbjct: 697 FTTM 700


>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 407 QHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGT 508
           QHV  A NG+ D+T+    + +  T+G    H T
Sbjct: 586 QHVDIATNGNPDLTNGTRNYDNAPTSGKRRTHNT 619


>06_03_0647 +
           23122074-23122187,23123423-23123488,23124467-23124676,
           23124849-23125060,23125641-23126208
          Length = 389

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 487 ASGCHILMTVASGCHILMAVASGCHMLMTVASGCRTEAVLFCR 359
           A  C +  ++ASG   L A+  G  +L+  A  CR  AVL CR
Sbjct: 178 ADACSVNSSLASGTTALAALVVGRSLLVANAGDCR--AVLCCR 218


>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
          Length = 406

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 434 HQDVTSAGNRHQDVTTAGNCHQHGTTAGNCHQHVTFDS 547
           HQ  T AG   Q  T AG  +Q G+T    + + T+D+
Sbjct: 273 HQGATQAGVYQQGTTQAG-AYQQGSTQAGAYAYPTYDA 309


>09_02_0502 + 9970516-9971028
          Length = 170

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 527 DDSCQRLSHADDSCQRLSHLDDGCQRMSHLDGRCQRLSHADDG 399
           DD   R+   ++   R+ + DDG  R+ H D    R+   DDG
Sbjct: 14  DDGGGRIHRHENGGGRIRYCDDGGGRICHPDDGGDRIHRRDDG 56



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 560 RPGSGCQMSHVDDSCQRLSHADDSCQRLSHLDDGCQRMSHLDGRCQRLSHADD 402
           R   G ++   ++   R+ + DD   R+ H DDG  R+   D     + H DD
Sbjct: 13  RDDGGGRIHRHENGGGRIRYCDDGGGRICHPDDGGDRIHRRDDGGGWIRHRDD 65


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 341 VRIRDSSTE-QHCLCPTTAGNRHQHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGTTAG 517
           VR R + +E Q  L P ++G     +          + +  RH   T   +  +H T   
Sbjct: 480 VRSRKNRSERQESLEPGSSGRSSDFIDQDTTESPSGSKSTGRHHKKTRRQSLEEHSTRRS 539

Query: 518 NCHQHVTFDSRSPAVSVYGRD 580
           + H+ +  D R  +V+V  +D
Sbjct: 540 SRHRDMEDDGRGQSVAVKRKD 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,307,835
Number of Sequences: 37544
Number of extensions: 450319
Number of successful extensions: 1157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)