Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p12
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    29   3.2  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = +2

Query: 383 PTTAGNRHQHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGTTAGNCHQHVTFDSRSPAV 562
           P  A  + Q   +  NGH    + G         G+ H H    G+ H+H    + +P  
Sbjct: 284 PPVAATQQQPPVSESNGHGHSHADGGHGHSHDDGGHGHSHDGGHGHSHEHSPSPAPAPVS 343

Query: 563 S 565
           S
Sbjct: 344 S 344


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 455 GNRHQDVTTAGNCHQHGTTAGNCHQHVTFDSRSPAVSVYGRDVT 586
           G+R  ++     C QHG+T   C     F S S  +S +G D T
Sbjct: 432 GDRCVNLFGGFKCCQHGSTEAECTDQ-AFSSDSSTISSHGADFT 474


>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 814 IVLNKYMFK*FVHKNFIMPYYFLRIKLLLVQKERVLNSLSSYTNFFG 674
           +V+N  +    +  N++  Y++   K L+ Q+   L S  S+ N +G
Sbjct: 214 LVINSLVVSLLLTANYLYNYFYSMFKPLISQQSHELQSAFSFFNLYG 260


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 424 WQRPSRCDIRWQPSSRCD 477
           W+ P +CD+ W+   +CD
Sbjct: 159 WRNPRKCDLLWKMFDKCD 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,097,333
Number of Sequences: 27780
Number of extensions: 420388
Number of successful extensions: 1193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)