Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p12
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           27   0.22 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   4.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   8.2  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 398 NRHQHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGTTAGNCHQHV 535
           +RH+ VT       D+ S   +  D   A NCH  G   G+C + V
Sbjct: 14  DRHRRVTC------DLLSFKGQVNDSACAANCHSLGKAGGHCEKGV 53


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 398 NRHQHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGTTAGNCHQHV 535
           +RH+ VT       D+ S   +  D   A NC   G   G+C + V
Sbjct: 39  DRHRRVTC------DLLSFKGQVNDSACAANCLSLGKAGGHCEKGV 78


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 276 HLFTH*GNKRIKVDVCIYS 332
           HL  H G+K  K + C YS
Sbjct: 7   HLRNHFGSKPFKCEKCSYS 25


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 398 NRHQHVTTAGNGHQDVTSAGNRHQDVTTAGNCHQHGTTAGNCHQ 529
           +RH+ VT       D+ S   +  D   A NC   G   G+C +
Sbjct: 39  DRHRRVTC------DLLSFKGQVNDSACAANCLSLGKAGGHCEK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,287
Number of Sequences: 438
Number of extensions: 5214
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)