Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p11
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 467 QQAAVTAGVDKITIDHLLLRQINQFVMFDCKLTFQTAQSGKRPAGATHSLIFYAS 631
           Q+  VT  V +I+ D L      +F  FD K T   +     P+  TH    YAS
Sbjct: 761 QETGVTLVVQEISSDGL------KFA-FDVKTTLNISDIALYPSQTTHGYDIYAS 808


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 180 PTKRTAWFRPLSKQYFIIPCL 242
           P K  AW   LS   F  PCL
Sbjct: 66  PQKIPAWIGELSATKFGFPCL 86


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 180 PTKRTAWFRPLSKQYFIIPCL 242
           P K  AW   LS   F  PCL
Sbjct: 66  PQKIPAWIGELSATKFGFPCL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,131
Number of Sequences: 438
Number of extensions: 5244
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)