Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p10
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...   213   3e-56
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    69   8e-13
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    52   8e-08
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    29   1.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.5  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    26   7.8  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score =  213 bits (520), Expect = 3e-56
 Identities = 100/145 (68%), Positives = 120/145 (82%)
 Frame = -3

Query: 820 VLTHCNTGSLATAGYGTALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPS 641
           VLTHCNTGSLAT+GYGTALG+IRSLH +  LEH +CTETRPYNQG+RLTA+ELVH+KIP+
Sbjct: 153 VLTHCNTGSLATSGYGTALGIIRSLHESGNLEHAYCTETRPYNQGSRLTAFELVHDKIPA 212

Query: 640 TLIVDSMVSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLT 461
           TL+ DS V+++MH  KI A++VGADRV  NGDTANKIGTY +AI+AK+   PF VAAP +
Sbjct: 213 TLVTDSTVASIMH--KIDAIVVGADRVTRNGDTANKIGTYNLAILAKHFGKPFIVAAPFS 270

Query: 460 SIDMSLPYGEKIKIEERPDREMTHI 386
           SID SL  G +I IE+RP  EMT I
Sbjct: 271 SIDTSLASGSQITIEQRPPIEMTTI 295


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
 Frame = -3

Query: 793 LATAGYGTALGVIRSLHATKRLEH-VFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMV 617
           + T G+   +  +    A + +   VF TE+RP   G  +T   L +  IP+ +++DS V
Sbjct: 139 ILTHGFSRGVAAVLLAAAKRHVRFKVFVTESRPSGSGCLMTR-TLKNACIPTCMVLDSAV 197

Query: 616 SALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA---------PL 464
           S  M+  ++  V+VGA+ V  NG   N+IGT+Q+A+ AK+   PFY  A         PL
Sbjct: 198 SFTMN--RVDLVLVGAEGVVENGGLINQIGTFQLAVFAKHAHKPFYAVAESHKFVRMFPL 255

Query: 463 TSIDMSLPYGEKIKIEERPDREMTHIGEHRIAAPGN 356
           +  D  +P+   I   + P  E  H     I  P +
Sbjct: 256 SQYD--IPFSRPILEFDDPSPETVHPEPEPIPTPSD 289


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
 Frame = -3

Query: 844 IDGDSPVRVLTHCNTGSLA-TAGYGTALGVIRSLHATKRLEHVFCTETRPYNQ-GARLTA 671
           I+ D  V+ + H ++  +  T G    +       A KR   V   E  P NQ G+   A
Sbjct: 187 INTDIEVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKFSVIVAEGFPNNQKGSHAMA 246

Query: 670 YELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHD 491
             L    I +T+I D+ + A+M   +++ VI+G   +  NG      G   +A  A++H 
Sbjct: 247 KRLAQAGIDTTVISDATIFAIMS--RVNKVILGTHAILGNGGLVTYSGAQLVAQAARHHA 304

Query: 490 VPFYVAAPLTSIDMSLPYG-EKIKIEERPDREMT 392
            P  V + +  +    PY  E I     PD+ M+
Sbjct: 305 TPVVVCSGIYKLSPVYPYDLESIIQLSSPDKIMS 338


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/113 (19%), Positives = 49/113 (43%)
 Frame = -3

Query: 721 VFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVAANGDT 542
           V   ++RP  +G R+    L    I  T ++ S +S +M  +++  + +G   + +NG  
Sbjct: 296 VVVVDSRPEFEG-RVCLKLLTEHGIECTYVMISALSYIM--QEVTKIFLGGHAMLSNGAL 352

Query: 541 ANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKIKIEERPDREMTHIG 383
            ++ GT  I+++    +VP             +     +  E  P  ++ ++G
Sbjct: 353 YSRAGTSLISLLGHESNVPVIACCESYKFTERIQLDSLVYNELAPGDQLVNMG 405


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 439  YGEKIKIEERPDREMTHIGEHRIAAPGNVFFFIIKILLVSW 317
            +GEK K+EE  D  +T+       AP N +  +I +LL  W
Sbjct: 936  FGEKKKVEENADYTITY-------APSNFYKRLIALLLFCW 969


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 762 PKAVPYPAVAKDPVLQCVSTLTGL 833
           P+ V YP  A D  L+C   + GL
Sbjct: 215 PRMVTYPIPANDDSLRCTDLIAGL 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,259
Number of Sequences: 5004
Number of extensions: 74243
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)