Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p10
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602... 220 1e-57
12_02_0420 - 18920511-18920717,18920968-18921209,18921786-189219... 67 1e-11
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 60 3e-09
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 42 6e-04
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 41 0.001
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880... 30 2.7
09_06_0264 - 21929086-21931368 29 6.2
>11_01_0728 +
6023361-6023495,6024880-6025212,6025306-6025361,
6025526-6025684,6025790-6025889,6026481-6026623,
6026728-6026833,6027139-6027277,6027363-6027631,
6027734-6027820
Length = 508
Score = 220 bits (537), Expect = 1e-57
Identities = 104/144 (72%), Positives = 122/144 (84%)
Frame = -3
Query: 826 VRVLTHCNTGSLATAGYGTALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKI 647
+ VLTHCNTGSLATAGYGTALGVIR+LH+ LE FCTETRP+NQG+RLTA+ELVH+K+
Sbjct: 299 ISVLTHCNTGSLATAGYGTALGVIRALHSGGILEKAFCTETRPFNQGSRLTAFELVHDKV 358
Query: 646 PSTLIVDSMVSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAP 467
P+TLI DS +ALM + I AVIVGADR+AANGDTANKIGTY +AI AK+H V FYVAAP
Sbjct: 359 PATLIADSAAAALMKSGCIQAVIVGADRIAANGDTANKIGTYNLAISAKHHGVQFYVAAP 418
Query: 466 LTSIDMSLPYGEKIKIEERPDREM 395
+TSID+SLP GE+I IEER E+
Sbjct: 419 ITSIDLSLPSGEQIVIEERSPNEL 442
>12_02_0420 -
18920511-18920717,18920968-18921209,18921786-18921927,
18922012-18922164,18922845-18923243
Length = 380
Score = 67.3 bits (157), Expect = 1e-11
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Frame = -3
Query: 781 GYG-TALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALM 605
GY L V++ + ++L V CTE RP G R++ EL IP +++DS V+ M
Sbjct: 207 GYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSN-ELAALGIPVKVLIDSAVAYSM 265
Query: 604 HTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEK 428
++ V VGAD V +G N +GTYQIA+VA + P YVAA P +K
Sbjct: 266 D--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQK 322
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = -3
Query: 736 KRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVA 557
KR VF E P +G + A ELV + + +T+I DS V A++ +++ VIVGA +
Sbjct: 230 KRSFRVFVAEGAPRYKG-HVLAKELVEKGVQTTVITDSAVFAMIS--RVNMVIVGAHAIM 286
Query: 556 ANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKIKIEE-RPDREMTHIGE 380
ANG +G +A+ A+ H VPF V A + P+ ++ + E + ++ GE
Sbjct: 287 ANGGVIAPVGMNMVALAAQRHAVPFVVVAGSHKLCPLYPHNPEVLLNELKSPSDLLDFGE 346
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = -3
Query: 721 VFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVAANGDT 542
V ++RP N+G L + LV + I T + +S +MH ++ V +GA + +NG
Sbjct: 437 VVVVDSRPNNEGQALL-HRLVAKGISCTYTHINAISYIMH--EVTRVFLGASSILSNGAV 493
Query: 541 ANKIGTYQIAIVAKYHDVPFYV 476
+ +GT +A+VA VP V
Sbjct: 494 YSSVGTAAVAMVAHAFGVPVLV 515
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/95 (27%), Positives = 46/95 (48%)
Frame = -3
Query: 760 VIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAV 581
++ H R V ++RP +G L LV + I T + +S +MH ++ V
Sbjct: 429 ILDHAHELGRKFRVIVVDSRPKLEGQGLLR-RLVEKGINCTYTHINAISYIMH--EVTRV 485
Query: 580 IVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYV 476
+GA + +NG +++GT +A+VA +P V
Sbjct: 486 FLGASSILSNGTVYSRVGTASVAMVAHAFGIPVLV 520
>04_03_0053 -
10286076-10286516,10286560-10287586,10287756-10288096,
10288198-10288248
Length = 619
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 440 W*RHVYGCERSRYVEGYIMIFCYNSYLIRSNFICCIPISSNPVSTNN---DCMYFPGV 604
W +H++ S Y+ +L +NF+C I S+P +N D Y PG+
Sbjct: 438 WKQHIFHQSASMYMTDLFPNVVPQGHLCFANFVCIITTESSPSHKSNSGGDIEYAPGL 495
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 200 LILHPFC*FNSLILYHNKSLRHGKFCDINIPFVLLLI 310
++L PF +++L+ S RH D+ I +VLL +
Sbjct: 328 ILLAPFLHITAIVLFAASSKRHHNTIDVKITYVLLCL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,099
Number of Sequences: 37544
Number of extensions: 414749
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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