Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11p10
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...   175   2e-44
Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    28   9.6  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score =  175 bits (427), Expect = 2e-44
 Identities = 80/145 (55%), Positives = 106/145 (73%)
 Frame = -3

Query: 820 VLTHCNTGSLATAGYGTALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPS 641
           V+T CNTGSLAT  +GTALGVIR+LH+  RL+ V+  ETRPYNQG RLT+ EL+H ++P 
Sbjct: 176 VMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPF 235

Query: 640 TLIVDSMVSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLT 461
            LI DSM +  M   ++  V+ GAD VA NGDTANKIGTY +A++ K+H++ FY   P T
Sbjct: 236 KLITDSMAAWAMKNHQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFT 295

Query: 460 SIDMSLPYGEKIKIEERPDREMTHI 386
           +I+ ++  GE+IKIEERP  EM  +
Sbjct: 296 TINKNIATGEEIKIEERPSAEMLRV 320


>Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1098.4 protein.
          Length = 305

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
 Frame = -3

Query: 796 SLATAGYG-TALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSM 620
           ++ T  Y    L  I   H +    HV+ TE++P   G +L   EL    +P+TL++DS 
Sbjct: 128 NILTHSYSKVVLETILDAHKSGYHLHVWVTESQPDASG-KLVFEELKKNGVPTTLVLDSC 186

Query: 619 VSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA---------P 467
           V  +M   +I AV+VGA+ V   G   NKIGT  + I+AK   VP YV A         P
Sbjct: 187 VGYVME--RIQAVLVGAEGVMETGGIINKIGTVNVCIIAKSRHVPVYVCAETIKFVREFP 244

Query: 466 LTSIDMSLPYGEKIKIEERPDREMTH 389
           L   D+   +  +  + ER + E+ H
Sbjct: 245 LNQADIPQEFKYRTSVIERNNLELEH 270


>Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical
           protein W04D2.5 protein.
          Length = 208

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -3

Query: 610 LMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGE 431
           +   R IHA I  AD +        +IGT Q+  +          A   +SID  LP  E
Sbjct: 24  IQQNRAIHASIRAADSIRDAHRQGTRIGTGQVETMEGTTGAGIQTAVNTSSIDARLPTAE 83

Query: 430 KIK 422
            +K
Sbjct: 84  TLK 86


>AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical
           protein Y47H9C.7 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 583 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAP 467
           V++ A     +G      G +QIA++AK H VP YV AP
Sbjct: 221 VVLVAAAYFPDGSCLVPAGGHQIALLAKRHCVPVYVLAP 259


>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 591 IFLVCIRAETILSTINVEGIFSWTSSYAVSLAP*LYGLVSVQ 716
           +  VC+RAE  +ST+ V  +F  T +  V LA  L+G +  Q
Sbjct: 256 VMQVCVRAEKQMSTVRVALLFPVTLATYVMLASPLFGDLRTQ 297


>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 522 YVPILFAVSPLAATLSAPTMTACIFLVCIRAETILSTINV 641
           Y+PI+  V PL  T+     +  I L+C+   T L T+++
Sbjct: 259 YIPIISLVVPLIFTIPNSQTSYFISLLCMSTHTFLGTLSM 298


>Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical
           protein F36G9.9 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 522 YVPILFAVSPLAATLSAPTMTACIFLVCIRAETILSTINV 641
           Y+PI+  V PL  ++    ++  I L+C+   T   T+++
Sbjct: 259 YIPIIVVVVPLMLSIPNSQLSFFISLICLSYHTFFGTLSM 298


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = -3

Query: 730 LEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVAAN 551
           LEH+    ++       L  ++ +HE      + D +V   M  +K+ A++   + V   
Sbjct: 70  LEHI--ESSKIIGAATLLIEFKYIHEAGTRGRVEDVVVDEKMRGKKLGALL---NEVLV- 123

Query: 550 GDTANKIGTYQIAIVAKYHDVPFY 479
            + A  IG Y++++  K   +PFY
Sbjct: 124 -EMAKTIGVYKLSLECKTELIPFY 146


>U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical
           protein C03G6.6 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 607 MHTRKIHAVIVGADRVAANGDTANKIGTY 521
           MH    +   VGAD V  NGD  ++IG Y
Sbjct: 141 MHKLGNNVTFVGADPVPHNGDLYSQIGNY 169


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = -3

Query: 730 LEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDSMVSALMHTRKIHAVIVGADRVAAN 551
           LEH+    ++       L  ++ +HE      + D +V   M  +K+ A++   + V   
Sbjct: 70  LEHI--ESSKIIGAATLLIEFKYIHEAGTRGRVEDVVVDEKMRGKKLGALL---NEVLV- 123

Query: 550 GDTANKIGTYQIAIVAKYHDVPFY 479
            + A  IG Y++++  K   +PFY
Sbjct: 124 -EMAKTIGVYKLSLECKTELIPFY 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,192,612
Number of Sequences: 27780
Number of extensions: 410022
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)