Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p09
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 189 5e-49
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 90 4e-19
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 66 6e-12
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 48 2e-06
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 31 0.20
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 1.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 1.0
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 1.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.6
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 5.6
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 5.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.8
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 189 bits (460), Expect = 5e-49
Identities = 93/223 (41%), Positives = 134/223 (60%), Gaps = 8/223 (3%)
Frame = -3
Query: 694 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 515
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++ + V+GA+G
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFE 62
Query: 514 CDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGK 335
D L L + +Q R+ +Y H + M+ + A M+ T+LY KRFFPYYV +AG+D +GK
Sbjct: 63 ADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGK 122
Query: 334 GCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNM--------QNVTEAPLPREK 179
G +YS+DP+G R RAGGSAA + P LDNQ+ L N + L E+
Sbjct: 123 GEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEE 182
Query: 178 ALALLKDVFISAAERDIYTGDSIYILIITANGIQEEKFELRKD 50
A+ + D F SA ER I GDS+ + IIT G++ L+KD
Sbjct: 183 AMKITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 89.8 bits (213), Expect = 4e-19
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 2/208 (0%)
Frame = -3
Query: 667 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 488
NGGS VA+AG + I +D RL T + K+F + + T LG TG D TL L
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 487 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 308
+ ++ +Y+ + + A ++S+ LY KRF PY+ V+AG+ +D + +D I
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSI 126
Query: 307 GHCA--RHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAER 134
G C +F G+A QL + ++V E L + + ++A +R
Sbjct: 127 G-CIDFAEDFIVSGTATEQLYGM---------CESVYEPNLEPDDLFETISQALLNAQDR 176
Query: 133 DIYTGDSIYILIITANGIQEEKFELRKD 50
D +G + +ITA+ + + R+D
Sbjct: 177 DCISGWGCVVYVITADKCIKRLVKGRQD 204
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 66.1 bits (154), Expect = 6e-12
Identities = 53/202 (26%), Positives = 92/202 (45%)
Frame = -3
Query: 664 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 485
G +I A+ D ++ AD+R + G I R KL +L+++ +G DT T+ LL
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 484 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 305
+ + MY + + A + S M Y + ++AG D G VYS G
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGG 142
Query: 304 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 125
+ GGS +A + D +N+T+ E+A+ LK+ A ERD
Sbjct: 143 SLHKQPLAIGGSGSAFIYGFCDANF----RENMTQ-----EEAVEFLKNAVALAMERDGS 193
Query: 124 TGDSIYILIITANGIQEEKFEL 59
+G +I ++I+ +G++ + F +
Sbjct: 194 SGGTIRMVILNKDGMERKFFAI 215
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 47.6 bits (108), Expect = 2e-06
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
Frame = -3
Query: 664 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 485
G +IV + D V+GADTR + G I ++ KKL +S + G DT +T ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 484 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 308
+ ++++ + + K A+ + + Y+ Y+ VL G D G +++
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYL--VLGGYDCKGPH-LFTIAAH 151
Query: 307 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 128
G + + A GS + +L+ + + L R +A+ L+K+ + D+
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKY---------QPDLERHEAMELVKEAIEAGIFNDL 202
Query: 127 YTGDSIYILII 95
+G + +++I
Sbjct: 203 GSGSNCDLVVI 213
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 31.1 bits (67), Expect = 0.20
Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 4/175 (2%)
Frame = -3
Query: 670 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 491
++ G + I D V+ A+ ++++ +KL+ + ++ + G D L
Sbjct: 29 NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILIN 88
Query: 490 LLQARMQMYEHEHNKSMTTPAVAQMLSTM----LYYKRFFPYYVSNVLAGLDSDGKGCVY 323
+ Q Y N+ M + + + + Y P+ VS + AG D ++
Sbjct: 89 YARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLF 148
Query: 322 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKD 158
+P G+ + G + +Q L+ + K+ N+ EA K L+ D
Sbjct: 149 QSNPSGNYGSWQANSIGGNSTSVQSLMRQE--YKDDINLDEASAMAVKFLSKTLD 201
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 445 ICYARVRTSASSLVEDASRLMCHTSSQSLPILY 543
+CY+ T++ L+E + H + SLPI+Y
Sbjct: 828 VCYSSFLTASPRLMEPVYMVEVHAPADSLPIIY 860
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -3
Query: 283 RAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 137
+AG S A + LL+NQI +N+T + P + ++K++ ++A+E
Sbjct: 540 KAGHSEAIERLALLENQIQEPEPENITSSQYPNQD---VIKEIPVTASE 585
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 739 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 608
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 474 CRCTNTSITNL*PLRQSHRCSQLCCI 397
CRCT T N+ L Q + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 572 VSGIYGKSSAETSVCSDNGIIIAGDGYN 655
V G G ++E VCSD G+ + DG N
Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -3
Query: 319 YDPIGHCARHNFRAGGSAAAQLQPLLDNQIG----LKNMQNVTEAPLPREKALALL 164
Y+P+ + A H FR G S + L+ + N G ++ +P +K +ALL
Sbjct: 332 YEPLFNTASHGFRPGRSCHSALRSIFTNFKGCTWWIEGDIKACFDSIPHDKLIALL 387
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 649 AIAGDDYAVIGADTRLSTGFSI 584
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 478 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 389
R Q ++NK M T A M TM+++KR
Sbjct: 666 RWQFRTIKNNKDMQTKAKRAMRETMVFWKR 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,164
Number of Sequences: 5004
Number of extensions: 72716
Number of successful extensions: 231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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