Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p09
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 175 4e-44
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 175 4e-44
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 86 3e-17
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 63 3e-10
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 28 7.0
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 28 7.0
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 28 7.0
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 28 7.0
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 9.2
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 9.2
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 9.2
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 175 bits (425), Expect = 4e-44
Identities = 89/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Frame = -3
Query: 697 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 521
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 520 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 341
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 340 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 164
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 163 KDVFISAAERDIYTGDSIYILIITANGIQEEKF-ELRKD 50
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 175 bits (425), Expect = 4e-44
Identities = 89/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Frame = -3
Query: 697 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 521
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 520 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 341
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 340 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 164
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 163 KDVFISAAERDIYTGDSIYILIITANGIQEEKF-ELRKD 50
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 85.8 bits (203), Expect = 3e-17
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 1/206 (0%)
Frame = -3
Query: 664 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 485
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 484 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 305
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 304 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 128
A +F A G+ L + +N +NM+ P E A + + +S ERD
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN-FWRENMK-------PDELFEATAQSI-LSCLERDA 178
Query: 127 YTGDSIYILIITANGIQEEKFELRKD 50
+G + IT + + + R D
Sbjct: 179 ASGWGAVVYTITKDKVNVSTIKARMD 204
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 62.9 bits (146), Expect = 3e-10
Identities = 54/207 (26%), Positives = 92/207 (44%)
Frame = -3
Query: 664 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 485
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 484 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 305
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 304 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 125
+R A GS + +Q LD+Q L E+ A++K A RD
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 124 TGDSIYILIITANGIQEEKFELRKD*F 44
+G + + +I G Q E F K F
Sbjct: 193 SGGVVRLAVINKAGSQFELFRPDKPGF 219
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 46.4 bits (105), Expect = 2e-05
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
Frame = -3
Query: 664 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 485
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 484 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 308
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 307 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 128
G F A GS + +L+ + + +++A L++ + D
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDF---------KVDMTKDEAEKLVQRALEAGMHGDN 213
Query: 127 YTGDSIYILII 95
+G+S+ ++II
Sbjct: 214 ASGNSLNLVII 224
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 8e-05
Identities = 31/130 (23%), Positives = 56/130 (43%)
Frame = -3
Query: 625 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 446
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 445 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 266
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 265 AAQLQPLLDN 236
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 183 SLGKGASVTFCIFFKPI*LSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLS 350
+L + A+ I + LS G AAA PPA G +Y H +PSL
Sbjct: 206 TLSRWAAFILMISLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLI 262
Query: 351 KPANTLDT*YGKNRL*YNIV 410
P T D +GK L Y +V
Sbjct: 263 TPMRTKDNVFGKIALVYGVV 282
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 408 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 569
V SI + V+ L+ S + ++ C ++ + V + + N VL +N FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275
Query: 570 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 674
L++++ P V PI S + +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 253 QPLLDNQIGLKNMQNVTEAPLPREKAL 173
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 253 QPLLDNQIGLKNMQNVTEAPLPREKAL 173
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 320 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFA*GKGP 174
LRP+ C P L ++ RC + A R ++ EY C RS + G P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 583 YTRDQKKLFKLSESTVLGATGCW 515
YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 583 YTRDQKKLFKLSESTVLGATGCW 515
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 583 YTRDQKKLFKLSESTVLGATGCW 515
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,291
Number of Sequences: 27780
Number of extensions: 421319
Number of successful extensions: 1219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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