Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p02
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 32 0.017
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 0.50
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 27 0.86
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 1.1
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 2.0
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 2.6
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 25 3.5
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 24 4.6
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 24 4.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 24 4.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 4.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 6.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 23 8.1
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 23 8.1
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 23 8.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 23 8.1
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 32.3 bits (70), Expect = 0.017
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 82 FLNRFSIMLVFWWEDLSFCIGYPFFKIF 165
FL RFS+ W +L +GY FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 0.50
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 153 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 52
+++ + ++FP Q D E I +L DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 0.86
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 7 NYIIYKLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 114
N +I G G +T ++ H+L+ LNR ++ L++
Sbjct: 536 NLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 108 QHDREAIQKLIQDMRKKQMQSLESK*TKF 22
Q E + +IQDM KKQ +S T+F
Sbjct: 960 QRTNEVLLPVIQDMHKKQFVGTQSNLTQF 988
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 218 WLCTHRFLLDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRF 87
WLCT L C+ S +I+ + KSS KTN++ F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 39 IPDFAFVSSSYPVLIFESLLYHVG 110
IP+ +S +YP LIFE+L +G
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLG 197
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 LVFWW-EDLSFCIGYPFFKIFWLVEKKEQSNRKRCV 210
L FW E L Y FWL++KK+Q +++R V
Sbjct: 23 LDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIV 58
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 4.6
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 84 FESLLYHVGFLVGRFVFL--YWLPI 152
F+ + +V F+VG +FL YW+ I
Sbjct: 269 FDFICNYVSFMVGSIIFLVVYWIGI 293
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 4.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 182 KNNPTGNDVYIAILPTSSFQLP 247
K NP+ NDV A L SF+ P
Sbjct: 54 KFNPSENDVLCASLKIKSFETP 75
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 4.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 210 YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 115
YT FPV + + NQP E T QI P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 4.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 54 FVSSSYPVLIFESLLYHVGFLVGRFVFL 137
F+ SSY I +SLL GFL VFL
Sbjct: 526 FLDSSYYKPILDSLLGVFGFLADSKVFL 553
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 6.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 208 HIVSCWIVLFFQP 170
H++SC+ LFF+P
Sbjct: 594 HVLSCYKTLFFEP 606
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 65 LISCINF*IASLSCWFSGGKICLFVLVTHSSKYFGWLK 178
L+ C +C+ G + L LV H S+ FGW K
Sbjct: 229 LLFCTASLFEKTACFSGIGHVLLKDLV-HESRTFGWTK 265
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 94 FSIMLVFWWEDLSFCIGYPFF 156
FSI+ W+ L F G+ FF
Sbjct: 506 FSILDSLWFHPLYFMFGFSFF 526
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 192 GLFFFFNQPKYFEEWV 145
GLF + + P YF EW+
Sbjct: 210 GLFQYVSCPNYFCEWI 225
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 20 INLVHLDSRLCICFFLISCIN 82
+ V LD+ +C ++ SC+N
Sbjct: 220 VPFVELDNASRVCLYITSCVN 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,448
Number of Sequences: 5004
Number of extensions: 32807
Number of successful extensions: 104
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -