Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p02
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270... 29 1.0
02_04_0391 + 22576839-22577387 27 2.3
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479... 27 3.1
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 26 5.4
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998... 26 5.4
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 26 7.2
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 25 9.5
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 25 9.5
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 25 9.5
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 25 9.5
>02_05_0287 -
27525722-27525812,27525927-27526057,27526945-27527022,
27527080-27527186,27527302-27527380,27528001-27528096,
27528192-27528443,27528691-27528840,27528953-27529277,
27529373-27529584
Length = 506
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 228 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 109
VGR + T+ P ++ F Q K FE W +T +IF +N
Sbjct: 81 VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 121
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 177 FNQPKYFEEWVTNTKRQIFPPENQHDREAI 88
FN+ K+ E TN Q+ P N+H+++ +
Sbjct: 47 FNKQKHVEIQPTNKLEQLIQPTNEHEQQQL 76
>04_04_0845 -
28646547-28646637,28646724-28646854,28647832-28647938,
28648043-28648121,28648578-28648667,28648814-28649065,
28649367-28649519,28649631-28649955,28650069-28650283
Length = 480
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 228 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 109
VGR + ++ P ++ F Q K FE W +T +IF +N
Sbjct: 82 VGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 122
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 168 PKYFEEWVTNTKR-QIFPPENQHDREAIQKLIQDMRKKQMQSLESK 34
PKY EEWV N R N R + + R++ MQ+ +++
Sbjct: 192 PKYHEEWVRNNARANERSRRNDRPRNFDRSRNFERRRENMQNFQNR 237
>02_04_0318 -
21999640-21999705,21999706-21999768,21999822-21999884,
21999938-22000000,22001097-22001141,22001914-22002325,
22003313-22003475,22004086-22004132,22004458-22004564,
22004651-22004684,22004754-22004807,22005599-22005723
Length = 413
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 10 YIIYKLGSLGFQTLHLFLP--HILY*FLN 90
Y Y L L +QT+ LFLP H Y FLN
Sbjct: 339 YCYYFLNPLPYQTIRLFLPSWHCYY-FLN 366
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 227 WVGWLCTHRFLLDCSFFSTNQNILK 153
W W C H C+FF NILK
Sbjct: 2433 WFNW-CNHLLQPYCNFFENYGNILK 2456
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 183 FFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQK-LIQDMRKKQMQSLESK 34
F FN+ + +EWVTN + EN ++ ++K + D K +S + K
Sbjct: 113 FIFNEYSW-DEWVTNDRLLKLTDENIRKQQELEKSQVVDKSVKSGRSAQHK 162
>08_01_0505 -
4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 204 SFPVGLFFFFNQPKYFEEWVTNTKRQIF 121
+F +GL+ N +EWV TKR F
Sbjct: 65 AFRLGLYGNLNVQSSVQEWVDETKRLFF 92
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 156 EEWVTNTKRQIFPPENQHDREAIQKLIQDM 67
EEW+TNT +I + +D+E+I ++I +
Sbjct: 619 EEWMTNTLNRI----DMNDKESISRIIDPL 644
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 93 AIQKLIQDMRKKQMQSLESK*TKFINNII 7
A+ KL ++ R KQ+QS S +NN++
Sbjct: 192 ALTKLPENDRSKQLQSTSSNLLSSLNNVV 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,039
Number of Sequences: 37544
Number of extensions: 173272
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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