Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p02
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-12|CAB70105.1| 90|Caenorhabditis elegans Hypothetical... 50 3e-07
Z93383-6|CAB07623.1| 283|Caenorhabditis elegans Hypothetical pr... 30 0.30
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 30 0.39
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 29 0.90
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 29 0.90
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 29 0.90
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 27 2.1
AF026215-7|ABR92608.1| 554|Caenorhabditis elegans Hypothetical ... 27 2.8
AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical ... 27 2.8
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine re... 27 3.6
U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical pr... 26 6.4
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 26 6.4
U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF026202-5|AAB71241.2| 285|Caenorhabditis elegans Hypothetical ... 25 8.4
>AL132949-12|CAB70105.1| 90|Caenorhabditis elegans Hypothetical
protein Y53F4B.14 protein.
Length = 90
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = -2
Query: 249 MGNWKLEVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQD 70
MG WKLE GR + +FPVG F+ FNQP F+E++ + ++ E ++L+
Sbjct: 1 MGGWKLETGRFLLLITFPVGAFWLFNQPTIFKEFMRGYRIPDSSAGDKAMAEFKEQLLAT 60
Query: 69 MRKKQMQS 46
RK++ ++
Sbjct: 61 KRKEEYEN 68
>Z93383-6|CAB07623.1| 283|Caenorhabditis elegans Hypothetical
protein F54B8.6 protein.
Length = 283
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 39 IPDFAFVSSSYPVLIFESLLYHVGFLV--GRFVFLYWLPILQNI 164
+ + AF+ YP L+F+++ Y +GFL+ RF+ +Y+ P+ I
Sbjct: 77 VKNLAFILI-YPFLVFDTMRYTLGFLITFDRFIAIYF-PVFYQI 118
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -2
Query: 165 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 34
K ++++TN ++I E ++++ IQKLIQ+ + L+ K
Sbjct: 218 KSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 94 FSIMLVFWWEDLSFCIGYPFFKIFWLVE-KKEQSNRKRCV 210
FS L W ++FC+G P F IF +V + +S+R+ V
Sbjct: 16 FSYTLELWMYGIAFCVGLPAF-IFTVVRLARSRSSRQHLV 54
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 94 FSIMLVFWWEDLSFCIGYPFFKIFWLVE-KKEQSNRKRCV 210
FS L W ++FC+G P F IF +V + +S+R+ V
Sbjct: 16 FSYTLELWMYGIAFCVGLPAF-IFTVVRLARSRSSRQHLV 54
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 94 FSIMLVFWWEDLSFCIGYPFFKIFWLVE-KKEQSNRKRCV 210
FS L W ++FC+G P F IF +V + +S+R+ V
Sbjct: 16 FSYTLELWMYGIAFCVGLPAF-IFTVVRLARSRSSRQHLV 54
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = -2
Query: 177 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 34
FN+ + ++ + + ++ E+ H + + +I+D +K + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = -2
Query: 177 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 34
FN+ + ++ + + ++ E+ H + + +I+D +K + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 198 PVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDRE 94
P G FF N F W TN + +P N ++ +
Sbjct: 571 PFGSNFFNNNYNSFNNWYTNKNKNYYPYSNSNNNK 605
>Z50872-2|CAA90755.1| 273|Caenorhabditis elegans Hypothetical
protein C05D12.4 protein.
Length = 273
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 219 MAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQ-MQSL 43
+ M T++ + F F + E WVTN K + +++ E ++K ++ KQ Q L
Sbjct: 196 LKMQTNW-IDTFLFEHSKMISEVWVTNQKMAVQSKQSEDQLEVLKKKKDVLKAKQAAQEL 254
Query: 42 E 40
E
Sbjct: 255 E 255
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 12 YYL*TWFTWIPDFAFVSSSYPVLIFESLLY 101
YY W W+ F+++S+P+L+ + Y
Sbjct: 271 YYF--WVVWVYTIPFIAASFPILLIYRIRY 298
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 194 LDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRFKN 81
+ CSF + + IL+ + DK +H K N ++ FKN
Sbjct: 18 VSCSFTKSGKQILQQ--IFEGDKDNHTKFNKFQELFKN 53
>AF026215-7|ABR92608.1| 554|Caenorhabditis elegans Hypothetical
protein F09G2.8b protein.
Length = 554
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 156 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 61
E +++++ P +HD AIQK+++D RK
Sbjct: 365 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 396
>AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical
protein F09G2.8 protein.
Length = 516
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 156 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 61
E +++++ P +HD AIQK+++D RK
Sbjct: 327 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 358
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 120 PPENQHDREAIQKLIQDMRKKQMQS 46
PP N D + Q ++++R+K++QS
Sbjct: 454 PPANAGDPQVQQNCVEELRRKRLQS 478
>AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine
receptor, class w protein8 protein.
Length = 330
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 220 DGYVHIVSCWIVLFFQPTKIF*RMGNQYKKTNLPTRKPT 104
DGY+ +V C++ + T IF + ++ NL K T
Sbjct: 222 DGYIAMVVCFLYIIVAGTLIFQLQKAKQRRKNLKAEKST 260
>U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical
protein F47F6.3 protein.
Length = 581
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 49 LHLFLPHILY*FLNRFSIMLVF 114
+HL+LP+IL+ NR+SI +F
Sbjct: 19 VHLWLPYILWENSNRYSIASLF 40
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 112 FWWEDLSFCIGYPFFKIFWLVEKKEQ 189
F W FC+ P F+ L+ KK Q
Sbjct: 379 FTWATYVFCVFLPIFEPIQLISKKPQ 404
>U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical
protein K02F3.6 protein.
Length = 404
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 133 FCIGYPFFKIFWLVEKKEQSNRKRCV 210
F GYP F W + KE +++ RCV
Sbjct: 144 FIHGYPEFWYSWRFQLKEFADKYRCV 169
>AF026202-5|AAB71241.2| 285|Caenorhabditis elegans Hypothetical
protein C10E2.1 protein.
Length = 285
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 95 SLSCWFSGGKICLFVLVTHSSKYFGW-LKKKNNP 193
S+S W K + + + K F W K+NNP
Sbjct: 52 SMSMWIGSNKADIEITCVNPKKSFSWSFVKQNNP 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,029,669
Number of Sequences: 27780
Number of extensions: 178035
Number of successful extensions: 525
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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