Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11p02
(313 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 29 0.013
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 26 0.12
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 0.86
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 1.5
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 1.5
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 2.6
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 4.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 20 6.0
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 20 6.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 8.0
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 20 8.0
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 20 8.0
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 29.1 bits (62), Expect = 0.013
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 98 LSCWFSGGKICLFVLVTHSSK-YFGWLKKKNN--PTGNDVYIAILPTSSFQLPI 250
L+ W GG ++ +V H K W + NN P GN V + ++P + + L +
Sbjct: 1481 LNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNNVKPGGNFVVLDLVPATWYHLRV 1534
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.8 bits (54), Expect = 0.12
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -2
Query: 180 FFNQPKYFEE-WVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLE 40
F N K+ ++ +V N+K + +HD ++ LI D+RKKQ++SLE
Sbjct: 340 FINILKFLKQKYVKNSKLE---KVIKHD--ILRMLIIDLRKKQLKSLE 382
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 23.0 bits (47), Expect = 0.86
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 263 EIFKLWVIGN---*KWVG---WLCTHRFLLDCS 183
E+FK+W+ G+ W+ W+CT L C+
Sbjct: 126 EVFKVWIFGDLWCSIWLAVDVWMCTASILNLCA 158
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 1.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 123 RFVFLYWLPIL 155
+ VFLYWLP +
Sbjct: 333 KVVFLYWLPCI 343
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 1.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 182 KNNPTGNDVYIAILPTSSFQL 244
K+NP G D +++P ++QL
Sbjct: 91 KHNPRGKDALWSLVPHMAWQL 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 218 ILPTSSFQLPIV*KF-LFRFL 277
ILP +S LP++ K+ LF F+
Sbjct: 285 ILPPTSLVLPLIAKYLLFTFI 305
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 20.6 bits (41), Expect = 4.6
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -3
Query: 221 GWLCTHRF 198
GW+C HR+
Sbjct: 377 GWICEHRW 384
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.2 bits (40), Expect = 6.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 218 ILPTSSFQLPIV*KFL 265
I+P++S LP++ K+L
Sbjct: 287 IIPSTSLALPLLGKYL 302
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 20.2 bits (40), Expect = 6.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +2
Query: 122 KICLFVLVTHSSKYFGWLKKKNNPTGND 205
K+ L ++ H+S W + N T N+
Sbjct: 113 KVILDLVPNHTSDQHKWFQMSINNTNNN 140
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.8 bits (39), Expect = 8.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 91 DSKINTGYEEETNAKSGIQVNQ 26
DS+I T + T+ + QVNQ
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQ 695
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 19.8 bits (39), Expect = 8.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 116 GGKICLFVLVTHSSKYFGWLKK 181
G K+ L + HSS W KK
Sbjct: 113 GLKVILDFVPNHSSHEHPWFKK 134
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 19.8 bits (39), Expect = 8.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 157 KIFWLVEKKEQSNRKRCVHSHP 222
K++ L ++E+ HSHP
Sbjct: 627 KVYKLAMERERDASLSSTHSHP 648
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,710
Number of Sequences: 438
Number of extensions: 2164
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6595479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -