Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11o24
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66515-4|CAA91350.1| 153|Caenorhabditis elegans Hypothetical pr... 68 3e-12
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 27 6.9
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 27 6.9
U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila disc... 27 6.9
AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein... 27 6.9
AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like pr... 27 6.9
Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z66515-4|CAA91350.1| 153|Caenorhabditis elegans Hypothetical
protein R53.4 protein.
Length = 153
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/65 (47%), Positives = 38/65 (58%)
Frame = -1
Query: 364 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWR 185
G + K +N VHGPY RYYGK DT F +KL ++ +W RR KTPSA F R WR
Sbjct: 47 GLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWR 106
Query: 184 WQHKY 170
+ Y
Sbjct: 107 VHNLY 111
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 304 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 131
+ PD P Q K+N+I + S PS+ +G+ + + ++ Y +P + G P Q
Sbjct: 34 FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 304 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 131
+ PD P Q K+N+I + S PS+ +G+ + + ++ Y +P + G P Q
Sbjct: 34 FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 320 RSCPLLWKT*YSIQPVEAERNRFVVRSPQQ 231
RSCP+LWKT + P+++ ++ +R P++
Sbjct: 875 RSCPILWKTEKTPHPMKS-KSMTCIRIPKK 903
>Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical
protein F58G1.1 protein.
Length = 965
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 286 EYQVFHSSGQDRKAHVQQDYTPWGNH 363
EYQ FH G R+ V + T GNH
Sbjct: 738 EYQKFHDGGLPRRVIVYRTGTSEGNH 763
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 320 RSCPLLWKT*YSIQPVEAERNRFVVRSPQQ 231
RSCP+LWKT + P+++ ++ +R P++
Sbjct: 875 RSCPILWKTEKTPHPMKS-KSMTCIRIPKK 903
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 320 RSCPLLWKT*YSIQPVEAERNRFVVRSPQQ 231
RSCP+LWKT + P+++ ++ +R P++
Sbjct: 875 RSCPILWKTEKTPHPMKS-KSMTCIRIPKK 903
>U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila discs
large homologprotein 1, isoform a protein.
Length = 967
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 194 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILLGVITESH 373
G +S + +A EPR VQL + + F+IV G P+Y +L G + +
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGGVADLS 547
Query: 374 IFRKARCTFLKIN 412
K L++N
Sbjct: 548 GNVKTGDVLLEVN 560
>AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein
DLG-1 protein.
Length = 967
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 194 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILLGVITESH 373
G +S + +A EPR VQL + + F+IV G P+Y +L G + +
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGGVADLS 547
Query: 374 IFRKARCTFLKIN 412
K L++N
Sbjct: 548 GNVKTGDVLLEVN 560
>AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like
protein DLG-1 protein.
Length = 967
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 194 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILLGVITESH 373
G +S + +A EPR VQL + + F+IV G P+Y +L G + +
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGGVADLS 547
Query: 374 IFRKARCTFLKIN 412
K L++N
Sbjct: 548 GNVKTGDVLLEVN 560
>Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical
protein C26D10.4 protein.
Length = 839
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 341 IILLGVITESHIFRKARCTFLKINSSRYLPN 433
I+ LG IF K +C L+IN+S LP+
Sbjct: 570 IVSLGFTNILDIFEKLQCCGLRINTSSDLPH 600
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 319 DPARYYGKPDTPFSQLKLNEIGSWFG--RRSKTPSAVAGAFSRA 194
D +Y + + KLNE G+W G R++ PS + F RA
Sbjct: 31 DINEFYDQTMETMDEFKLNERGAWHGMVERTRAPSEI--LFGRA 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,811
Number of Sequences: 27780
Number of extensions: 242493
Number of successful extensions: 632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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