Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11o18
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.023
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.052
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.052
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.091
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.12
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.16
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.28
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 30 0.37
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.64
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 1.1
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 2.0
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 2.6
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 2.6
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.6
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 27 3.4
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 4.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 4.5
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 6.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 7.9
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 7.9
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 34.3 bits (75), Expect = 0.023
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Frame = -3
Query: 594 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 424
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 423 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 283
+ E KLN ++ A++LK + ++ES K G + F +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431
Query: 282 RIDDRIKLAFVLGQERHFRKRKMRFED 202
+I IK E FRK + E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.052
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -3
Query: 609 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 439
F+ ++ + T G + + + IE +L ++ +S F+ T+ + K++V F
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618
Query: 438 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 331
F+L+L L L++LQS + + S+ G T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.052
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -3
Query: 570 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 391
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 390 QSA 382
A
Sbjct: 433 VDA 435
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.091
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Frame = -3
Query: 729 SSLPFKRNYF--HKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERD 556
S L +R Y+ H + L+ + K + N D +S + +RD
Sbjct: 367 SQLESQRLYYESHLSNMSQKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRD 426
Query: 555 DLRDKIESVLKHVK----KLNTNSEKFMVTHETFKNDVGNRFEQ---FELRLNELDAKLN 397
D ++ S L+H+K + + +E +V +T + + +Q + ++N+L+ +L
Sbjct: 427 DKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLR 486
Query: 396 MLQ-----SAEKLKTAIVTESKNGTVTFPRDIT 313
L S E K E +NGT+ P + T
Sbjct: 487 DLMFTISASQEIQKMGQSEELQNGTIVLPNNST 519
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -3
Query: 576 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 397
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 396 MLQSAEKLKTAIVTESK 346
MLQ ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.5 bits (68), Expect = 0.16
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Frame = -3
Query: 729 SSLPFKRNYFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDL 550
+SL + N F +Q +++ L L K+L D++ LL Q E ER DL
Sbjct: 491 TSLQEQNNEFDRQLKEQE-EDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDL 549
Query: 549 RDK-----------IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 403
+ E+ +K ++ TNS+ V+ + N++ ++ ++ +L+LNE + K
Sbjct: 550 KQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKK 609
Query: 402 LNML 391
L
Sbjct: 610 YQEL 613
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 510 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 343
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 465 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 307
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 30.3 bits (65), Expect = 0.37
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -3
Query: 651 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 472
AT+QG +L+ +N L L E DD D+ + + ++ +
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376
Query: 471 TFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFP 325
T +GN E R ++ +L S+ + T I ++ + +T P
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLP 425
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 229 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 333
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 684 KRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKK 511
+R +N++ T QG + + +NF NK N L E DLR K V+ V
Sbjct: 125 QRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR-KGAYVISPVPF 183
Query: 510 LNTNS 496
+N N+
Sbjct: 184 INGNN 188
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/78 (19%), Positives = 34/78 (43%)
Frame = -3
Query: 621 MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 442
M FD N + ++ GE +++ ++ + + +LNT + E + RF
Sbjct: 133 MNSRFDTVQNEMTSMK--GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRF 190
Query: 441 EQFELRLNELDAKLNMLQ 388
+ R N +D + + ++
Sbjct: 191 NSIDQRFNSIDRRFDSME 208
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 394
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 393 LQ 388
+
Sbjct: 268 FE 269
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 156 AIQCINEKLYDKHYKIRKIAKRVI 85
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 702 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 592
FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 82 FHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/78 (19%), Positives = 34/78 (43%)
Frame = -3
Query: 621 MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 442
M FD N + ++ GE +++ ++ + + +LNT + E + RF
Sbjct: 133 MNSRFDAVQNEMTSMK--GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRF 190
Query: 441 EQFELRLNELDAKLNMLQ 388
+ R N +D + + ++
Sbjct: 191 NSIDQRFNSIDRRFDSME 208
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -3
Query: 534 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 355
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 354 ES 349
S
Sbjct: 409 GS 410
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/68 (19%), Positives = 32/68 (47%)
Frame = -3
Query: 696 KQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHV 517
++++ D SL ++ ++ NF +++ H ++ + +LR + + KH
Sbjct: 250 QEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHA 309
Query: 516 KKLNTNSE 493
K+ N+E
Sbjct: 310 KEAQKNAE 317
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 761 RAQFQDLCKNLLHCRIL 811
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = -3
Query: 708 NYFHKQKSKRDLNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRD 544
NY H + S G L A T+ G+ + LMR +F+ L+ GE+DD +
Sbjct: 1370 NYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKG 1429
Query: 543 KIESVL 526
E+++
Sbjct: 1430 ISENIM 1435
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 31 LQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 138
L F LF + T+HV F + F F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 606 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 433
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 432 ELRLNE 415
L++ E
Sbjct: 645 SLKVFE 650
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 7.9
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -3
Query: 615 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 436
+N N+ +HL L DK + L + K TN+ KF V ET +G Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623
Query: 435 FELRLNELDAK 403
R EL AK
Sbjct: 624 TMERQGELVAK 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,228
Number of Sequences: 5004
Number of extensions: 73666
Number of successful extensions: 290
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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