Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11o08
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 203 2e-53
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 203 3e-53
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.4
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.8
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 4.3
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 9.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 203 bits (496), Expect = 2e-53
Identities = 103/203 (50%), Positives = 139/203 (68%), Gaps = 2/203 (0%)
Frame = -2
Query: 820 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 641
V D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+
Sbjct: 154 VDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNE 213
Query: 640 DQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ 461
D G+ +AFRNIPGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++
Sbjct: 214 DAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQL 273
Query: 460 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 287
KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333
Query: 286 AAVLKRKAILELRRRKNLKALAD 218
A KA ++L K KA +
Sbjct: 334 AKAY--KANVKLNTGKTPKAAGE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 203 bits (495), Expect = 3e-53
Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 2/203 (0%)
Frame = -2
Query: 820 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 641
V D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL++FN+
Sbjct: 154 VDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNE 213
Query: 640 DQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ 461
D G+ +AFRNIPGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++
Sbjct: 214 DTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQL 273
Query: 460 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 287
KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333
Query: 286 AAVLKRKAILELRRRKNLKALAD 218
A KA +++ K KA +
Sbjct: 334 AKAY--KANVKINSEKTPKAAGE 354
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.4
Identities = 27/109 (24%), Positives = 46/109 (42%)
Frame = -2
Query: 466 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 287
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 286 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 140
+ ++ + + L ++ L+KRN K + RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 284 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 445
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -2
Query: 400 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 227
+S + + +K+ IR R+L+P ++ + N Y+ + + ++ R R
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717
Query: 226 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 137
L ++E G + +PA + + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 543 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 409
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Frame = +2
Query: 503 PAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEG----ASQTLILVEDYEGPLT 670
P E SP S TS Q + + Q+L V++ S T ++ + YE PLT
Sbjct: 93 PRELQTSPI--VSPTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLT 150
Query: 671 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 775
D + T HL+ CLE D
Sbjct: 151 RDLIRRSKSDADQTPPTGFKHLRH-SSCLEMAGSD 184
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 537 VSSSGLSPHSAGLTPYSGHGRHHRNK 460
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.8
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -2
Query: 418 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 242
++T LK DE+RK+ N + L + +++ + L+ + K + +EL
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422
Query: 241 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 143
N LA+ E LKL + + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,174
Number of Sequences: 5004
Number of extensions: 52618
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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