Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11o08
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               108   6e-24
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                29   4.6  
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      29   4.6  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      28   8.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   8.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  108 bits (259), Expect = 6e-24
 Identities = 49/95 (51%), Positives = 65/95 (68%)
 Frame = -2

Query: 820 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 641
           ++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N 
Sbjct: 151 ISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNN 210

Query: 640 DQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGR 536
           DQGL +AFRN+PGVE           L PGGHLGR
Sbjct: 211 DQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 34/82 (41%), Positives = 43/82 (52%)
 Frame = -2

Query: 448 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 269
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 268 KAILELRRRKNLKALADAEKSG 203
             +L + RR+  K  A A+K G
Sbjct: 277 AEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -2

Query: 475 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 329
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = -2

Query: 340 RKLNPLTNNK-----AMLKLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNP 179
           RK  P   NK     A   +  Y A  +R A  +E+RR++  K L   EK   +L  R  
Sbjct: 87  RKSAPFATNKDVRHQAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREA 144

Query: 178 AMKAEKLRERRR 143
           AM+ ++ +ER R
Sbjct: 145 AMEEKRQKERLR 156


>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -2

Query: 361 KRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSK 188
           K V R TR+ NPL   K + K  P+ +  K  +K        K    +   EK    L +
Sbjct: 369 KPVERQTRRFNPLVIPKKLQKDLPFKSKPKDAKKRQRPSLESKRAVVMEPQEKKVYSLMQ 428

Query: 187 RNPAMKAEKLRERRRK 140
           +      EKLR+R+ K
Sbjct: 429 QLYTANKEKLRKRKEK 444


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 400 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 296
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 537 VSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQR-WPTLTSHVFSSLMRSGRSSVLPT 361
           + SS L+ H+ G+    GHGR   +      C SQ  WP + S       + G +  LPT
Sbjct: 36  IYSSVLAAHNRGVIFDVGHGRGSFSWTVAELCASQDFWPDVISTDLHVDCQKGPAYDLPT 95

Query: 360 NA*SVLH 340
               +LH
Sbjct: 96  VMTKMLH 102


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 677 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGY 820
           +T + HF     KT R +H+K        P E     GL+D+LD  G+
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGF 60


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
 Frame = +2

Query: 422 VGHLWLGQVEVLLLFRWCLP*PE*GVKPAECGLSPDDETSKMTSRSQLQEVQLV-NIQEL 598
           + HL+ G V+V+ + R CLP  +  V+ A        +   + S+   Q+++    ++ L
Sbjct: 41  IKHLFDGDVKVIKVCRRCLPYKKPKVEGAVPTKVVKSKGKVLQSKLLKQKIKKARKLKSL 100

Query: 599 HTGDVAEGASQTLILVEDYEGPLTLDTTTVAHF--TLTSTKTLRLVHLKDIRPCLEAPQE 772
             GD  E ++QT  +    E   +    T A+   ++   K L +VH   +   ++ P  
Sbjct: 101 VKGDQEEISTQTKSISPKTEAKSSFKGDTKANILDSVCVKKDLVVVHNLKVTEGMQIPDA 160

Query: 773 DDSLFGLVDLLD 808
                G  +++D
Sbjct: 161 TSLCGGTFEIVD 172


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
 Frame = +2

Query: 422 VGHLWLGQVEVLLLFRWCLP*PE*GVKPAECGLSPDDETSKMTSRSQLQEVQLV-NIQEL 598
           + HL+ G V+V+ + R CLP  +  V+ A        +   + S+   Q+++    ++ L
Sbjct: 417 IKHLFDGDVKVIKVCRRCLPYKKPKVEGAVPTKVVKSKGKVLQSKLLKQKIKKARKLKSL 476

Query: 599 HTGDVAEGASQTLILVEDYEGPLTLDTTTVAHF--TLTSTKTLRLVHLKDIRPCLEAPQE 772
             GD  E ++QT  +    E   +    T A+   ++   K L +VH   +   ++ P  
Sbjct: 477 VKGDQEEISTQTKSISPKTEAKSSFKGDTKANILDSVCVKKDLVVVHNLKVTEGMQIPDA 536

Query: 773 DDSLFGLVDLLD 808
                G  +++D
Sbjct: 537 TSLCGGTFEIVD 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,010,673
Number of Sequences: 59808
Number of extensions: 430058
Number of successful extensions: 1538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)