Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11o05
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   3.5  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   6.0  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   6.0  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    26   6.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   8.0  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   8.0  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 622 YINLVISSVY*TLSRLLTTPFFVNST 699
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 536 RHGLH-LSKFKNAFASVSTTFVHHPI 462
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 86  LISLVEIYLVDVVHQHVVLMTNFFQRVEYL 175
           L+SL  +YLV    QH++     FQRV +L
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFL 332


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 818 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 723
           D  K+ T +M+S   +NT+R WD  VK GK++
Sbjct: 59  DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 732 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 818
           A+  + VPR  RVI QV+Q   R R K+I
Sbjct: 4   AVEKDAVPRKRRVISQVSQACIRCRQKKI 32


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 368 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 475
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,970
Number of Sequences: 5004
Number of extensions: 62015
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)