Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11o05
         (868 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p pro...    29   6.3  
AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB...    29   6.3  
AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA...    29   6.3  

>BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p
           protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 259 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 414
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


>AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB,
           isoform B protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 259 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 414
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


>AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA,
           isoform A protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 259 NVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*P 414
           NV+  +  IGD     T NCLQ  C  T   T         +   CPP + P
Sbjct: 750 NVLGKLYKIGDILPQDTGNCLQ--CICTDAVTPDEMPSVTCSPHNCPPLVLP 799


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,194,610
Number of Sequences: 53049
Number of extensions: 656087
Number of successful extensions: 1953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4188579408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)