Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11o01
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    27   4.4  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   7.7  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   7.7  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 428 FISTSLSV-VLSEKPAIFLHIFPTDRGAFVIPQSSASGD----LEIDDGSARETTFFLYD 592
           +++T+L   V+++   +   +  T+   +V P+ +ASGD    LE D G    +  FLYD
Sbjct: 77  YMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYD 136

Query: 593 VFV 601
             V
Sbjct: 137 AGV 139


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 598 ENIVKKEGRLTSAPVVDLEIATST*LRYHKSTSI 497
           E +V K   L  + ++DL IAT T L+Y +S S+
Sbjct: 393 EKVVSKNKDLPKSALIDLVIAT-TALKYTQSNSV 425


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 697 VRGTDIAIDQV---ETSEAAATKRGIGTVNVIATGNENIVKKEGRLTSA 560
           + G  +A+D+     T  ++  KRG G + V ATG+   V +   L +A
Sbjct: 228 ITGESLAVDKHYGDPTFASSGVKRGEGLMVVTATGDSTFVGRAASLVNA 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,359
Number of Sequences: 5004
Number of extensions: 58410
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)