Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11o01
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 31 0.87
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494... 31 1.1
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 31 1.5
06_01_0571 - 4038319-4040877,4040962-4041012 30 2.0
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 30 2.0
11_03_0206 + 11655132-11655232,11655433-11655823 29 3.5
02_03_0318 - 17664121-17664522 29 3.5
11_08_0055 - 28095996-28096934 29 6.1
04_01_0481 - 6302066-6303118 29 6.1
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 28 8.1
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 519 LSQVLVAISRSTTGALVRRPSFFTMFSFPVA 611
+SQ L+ ++RS + + V RP F +F+F VA
Sbjct: 747 ISQALIFVTRSRSWSFVERPGFLLVFAFLVA 777
>07_01_0659 +
4946937-4946990,4947579-4947698,4947820-4947918,
4948038-4948175,4948268-4948402,4948501-4948609,
4948735-4948976,4949061-4949180,4949272-4949391,
4949477-4949599,4949708-4949812,4949896-4950040,
4950337-4950501,4950621-4950859,4950939-4950971,
4951082-4951163,4951314-4951474,4951566-4951751,
4951877-4952059,4952166-4952347,4952461-4952557
Length = 945
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 519 LSQVLVAISRSTTGALVRRPSFFTMFSFPVA 611
+SQ L+ ++RS + + V RP F +F+F VA
Sbjct: 760 ISQALIFVTRSRSWSFVERPGFLLVFAFFVA 790
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 519 LSQVLVAISRSTTGALVRRPSFFTMFSFPVA 611
+SQ L+ ++RS + + + RP F +F+F VA
Sbjct: 816 ISQALIFVTRSRSWSFIERPGFLLVFAFFVA 846
>06_01_0571 - 4038319-4040877,4040962-4041012
Length = 869
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 519 LSQVLVAISRSTTGALVRRPSFFTMFSFPVAITFTVPIPLF 641
+SQ L+ ++RS + + V RP F +F+F A I ++
Sbjct: 766 ISQALIFVTRSRSWSFVERPGFLLLFAFFAAQMVATAIAVY 806
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 703 ENVRGTDIAIDQVETSEAAATKRGIGTVNVIATGNENIVKKEGRLTSAP-VVDLEIATST 527
ENV G D A + A + +GT + + I++K+ RL AP +V + TS+
Sbjct: 185 ENVHGDDSAGKMDLEQQNAISGHSLGTAYEVVRAPKRIIEKDSRLRYAPKIVPKSVKTSS 244
>11_03_0206 + 11655132-11655232,11655433-11655823
Length = 163
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 332 ISMLVNLPNIRCNACRLYSDGHFNPPLP 249
I++ + LP+ R +ACR DG NPP P
Sbjct: 53 ITLCLGLPSSRAHACRAVPDGQ-NPPNP 79
>02_03_0318 - 17664121-17664522
Length = 133
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 480 RKMAGFSERTTDNEVLMKLRHPREEFNQCSNRPSVS 373
R+ + ER + E+ M RH R +QC++RPS S
Sbjct: 63 RRSSAVEERREEREMAM-CRHHRRPQSQCASRPSTS 97
>11_08_0055 - 28095996-28096934
Length = 312
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +2
Query: 311 EGSLTSKLSYNYYNMTILGHLETDGRLLHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIF 490
EGSL YN+ I+ L G +WL+ S L + + S+ + L I
Sbjct: 53 EGSLRQTCDTGDYNIVIISFLSVFGHGKYWLDLSGHDLRDVGADIRHCQSKGVYMLLSI- 111
Query: 491 PTDRGAFVIPQSSASGDL 544
D + +P S ++ D+
Sbjct: 112 GGDGDGYSLPSSKSAADV 129
>04_01_0481 - 6302066-6303118
Length = 350
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 443 LSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEIDDGSARETTFFLYDVFV 601
+S +S KP LH + P+ SG +D +ETT FL+D F+
Sbjct: 293 VSSFVSSKPIDHLHETERHSSLSIKPKPCPSGPHNVDLVYHQETTRFLHDAFL 345
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 395 HWLNSSRGCLNFISTSLSVVLSEKPAIFLHI 487
HWLN S +N S +L ++P IFL +
Sbjct: 494 HWLNQSYNVVNHAFEEKSKLLEKEPLIFLSL 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,909
Number of Sequences: 37544
Number of extensions: 373363
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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