Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11o01
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024795-1|AAF60695.2| 256|Caenorhabditis elegans Hypothetical ... 29 3.1
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 7.2
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 28 9.5
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 28 9.5
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 28 9.5
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 28 9.5
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 28 9.5
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 28 9.5
>AC024795-1|AAF60695.2| 256|Caenorhabditis elegans Hypothetical
protein Y48G1BR.1 protein.
Length = 256
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 437 TSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGD-LEIDDGSARETT 577
TSL V +K ++F I P D G F Q++ D +E D S +TT
Sbjct: 80 TSLEVNPIQKTSVFSPITPLDGGMFNFSQATIEDDSMEDQDESTEKTT 127
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 CLKRSVEEAD*SAHLNIDDMHCI*CLEGSLTSKLSYNYYNM-TILGHL 373
CL R + D ++H+ + M C+ CL S LS + + +GHL
Sbjct: 784 CLGRKKRDTDENSHIRVKRMGCLPCLGRKKRSTLSQSGCSQCNSMGHL 831
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 CLKRSVEEAD*SAHLNIDDMHCI*CLEGSLTSKLSYNYYNM-TILGHL 373
CL R + D ++H+ + M C+ CL S LS + + +GHL
Sbjct: 429 CLGRKKRDTDENSHIRVKRMGCLPCLGRKKRSTLSQSGCSQCNSMGHL 476
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 CLKRSVEEAD*SAHLNIDDMHCI*CLEGSLTSKLSYNYYNM-TILGHL 373
CL R + D ++H+ + M C+ CL S LS + + +GHL
Sbjct: 381 CLGRKKRDTDENSHIRVKRMGCLPCLGRKKRSTLSQSGCSQCNSMGHL 428
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 CLKRSVEEAD*SAHLNIDDMHCI*CLEGSLTSKLSYNYYNM-TILGHL 373
CL R + D ++H+ + M C+ CL S LS + + +GHL
Sbjct: 1109 CLGRKKRDTDENSHIRVKRMGCLPCLGRKKRSTLSQSGCSQCNSMGHL 1156
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 1778 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 1837
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 1695 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 1754
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 2016 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 2075
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 2016 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 2075
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 2016 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 2075
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 374 ETDGRL-LHWLNSSRGCLNFISTSLSVVLSEKPAIFLHIFPTDRGAFVIPQSSASGDLEI 550
+TD L + W + +N L+ H P D G + + S+A GD E+
Sbjct: 1711 QTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDAEV 1770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,212
Number of Sequences: 27780
Number of extensions: 325576
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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