Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11o01
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   8.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 LLHWLNSSRGCLNFISTSLSVVL 457
           L  WL    GCL + ST+++ +L
Sbjct: 305 LNEWLYILSGCLYYFSTTINPIL 327


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 438 VLMKLRHPREEFN 400
           V+    HPREEFN
Sbjct: 293 VIFHFAHPREEFN 305


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 152 LFIDNNLNLHFLHTSIEDLKKLTAT*SCLKRSVEE 256
           L IDN     +L   I +  +L  T +C+ R ++E
Sbjct: 370 LTIDNLRKAKYLRACITESLRLIPTTTCIARILDE 404


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 398 WLNSSRGCLNFISTSLSVVL 457
           W+    GCL + ST+++ +L
Sbjct: 296 WVYPLTGCLYYFSTTINPIL 315


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 83  RLVLGMSDHPRDRTICRGSYMFTLFIDNNL 172
           RLV    D     +  + S +   FIDNNL
Sbjct: 98  RLVNNCKDITESNSCKKSSKLLQCFIDNNL 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,804
Number of Sequences: 438
Number of extensions: 4204
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)