Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n24
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 29 0.44
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 3.1
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 3.1
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 3.1
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 4.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 5.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 5.4
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 5.4
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 7.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 7.1
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.1
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 25 7.1
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 24 9.4
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 28.7 bits (61), Expect = 0.44
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 159 ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 16
A F + + IE IK L +IN + + + +L YNE +E + N T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 300 FNEPTQKNYEYIKKLFLRTKYMDDS-IDYKDFNRRILLI 187
F EP K Y +K+LF TKY+ D I ++D LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.1
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -2
Query: 426 NFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT--QKNYEYIKKLF 253
+ D + F R++ D A+ N + N L+++EKA N P Q + + K +F
Sbjct: 59 SLADPNHFIRKVENDNMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVF 118
Query: 252 LRTKYMDDSID 220
L+ D I+
Sbjct: 119 LQGLLSMDEIE 129
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 396 QLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYM 235
QL+ KC + D+L +E ++KA+D E Q E LF + ++
Sbjct: 803 QLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHV 856
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 320 KRPETGILMSQLKKTMNTLKNY 255
K+P+ G+ +S L+KT+N +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 153 YFPSYKEIIEVAIKRLNKI 97
Y PSYKE+ ++A ++ K+
Sbjct: 1211 YLPSYKELSKIAAAQIKKV 1229
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 214 FIIYRIVHVFCS*K*FFNVFIVFLSWLIKIPVS 312
++I+ + + S FF+ +V +SWL+++P S
Sbjct: 118 WLIFLFITIGISASDFFSTNLVTISWLLQLPDS 150
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -2
Query: 195 LLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 16
L+I +FAL Y + + L + N + S +L ++ ++NL++PV
Sbjct: 433 LIISPQFALGSVLEYENQRRAFCDEVATLLKEKNSSVSSESLEVLSNWIVSVDNLESPVD 492
Query: 15 DE 10
E
Sbjct: 493 PE 494
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 24.6 bits (51), Expect = 7.1
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Frame = -2
Query: 420 VDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFN-EPTQKNYEYIKKLFLRT 244
+D+ LI D + L K A A+ + + A+ F + T +E+I + R
Sbjct: 102 LDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQKLAKFGSFKLKETPNVHEWIDQ---RQ 158
Query: 243 KYMDDSIDYKDFNRRILLI-----VFKFALNKSASYFPSYKE--IIEVAIKRLNKINPDL 85
+ I+Y+ ++ L+ F+ ALN + + ++ + + + + I D+
Sbjct: 159 VHFTSMINYRTSQLKLALLKRKLSFFREALNSAELEWKRVQQDQLTSASERSIENIADDI 218
Query: 84 KSS-PRAMLQHYNECLENLDN 25
+S P+A+L++ CL + DN
Sbjct: 219 PASEPKAILENGEGCLNDNDN 239
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 93 PDLKSSPRAMLQHYNECLENLDNPVTDE 10
P+L++ R L+H EC+E + V+ E
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSRE 798
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 432 SNNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT 286
+NNF+ T + + + K+ DLL N+L + +R PT
Sbjct: 579 NNNFITPKTVHNKQAAETTNDQNKDKDLLYLNLLPYINSITERNSASPT 627
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/47 (21%), Positives = 27/47 (57%)
Frame = -2
Query: 141 YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEPSL 1
Y E+++ K+LNK + K + +A ++ + + +L++ + ++ L
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKL 232
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 186 VFKFALNKSASYFPSYKEI 130
VFK +N+ AS+FPS+ I
Sbjct: 64 VFKDFINEVASHFPSFNRI 82
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y+NE + EYIKK+ R + D
Sbjct: 138 YYNEKYEVGAEYIKKVIARLQSYD 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,757
Number of Sequences: 5004
Number of extensions: 36914
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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