Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n24
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0290 + 29016410-29018920                                         28   3.0  
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950...    28   4.0  
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177...    27   7.0  
03_06_0678 - 35480711-35484658                                         27   7.0  

>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 330 EIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDY 217
           E  +    +Y  +PT +NY  +  L  R  Y+D+++D+
Sbjct: 585 EYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDF 622


>02_05_0227 -
           26994462-26994591,26994714-26994803,26994895-26995022,
           26995179-26995573,26995666-26995792,26995909-26995986,
           26996096-26996198,26996315-26996589,26996700-26996726
          Length = 450

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/64 (20%), Positives = 33/64 (51%)
 Frame = -2

Query: 408 TFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDD 229
           + AR++I + CS++IK    +P+N   +   ++ +      Q+  +++K+   +   +  
Sbjct: 112 SLARRVIEEGCSSIIKEKQNVPSNKSSVSSASKKQPIPSGQQQKPKFVKEEKRKVDALRQ 171

Query: 228 SIDY 217
           + DY
Sbjct: 172 NRDY 175


>09_04_0719 +
           19716536-19716857,19716949-19717101,19717493-19717707,
           19717785-19717855,19717998-19718157,19718598-19718790,
           19718936-19719091,19719229-19719317,19719602-19719695,
           19719870-19720039
          Length = 540

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -2

Query: 237 MDDSIDYKDFNRRILLIVFKFALNKSASYFPSYKEI 130
           +  S ++K F+R + + + K   +++A +FP+ K +
Sbjct: 371 LGSSREFKGFSREVDMSILKCIWDRAAEFFPTLKNV 406


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 296 LKYLSLAFSTISKMFAGNRSAFLIRALHLSVISCLANVSTSTKLLEVI 439
           L+YL L++S I  +       + ++ L+LS+  CL  +    K +  +
Sbjct: 598 LRYLDLSYSKIEALPEDISILYHLQTLNLSICDCLCQLPNGMKYMTAL 645


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,041,165
Number of Sequences: 37544
Number of extensions: 196689
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)