Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n24
(451 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha... 30 3.2
AC102952-1|AAS07505.1| 453|Homo sapiens Homo sapiens dynein, ax... 30 3.2
Z82216-2|CAI43051.1| 595|Homo sapiens premature ovarian failure... 29 7.3
Z82216-1|CAI43050.1| 589|Homo sapiens premature ovarian failure... 29 7.3
BC017500-1|AAH17500.1| 595|Homo sapiens POF1B protein protein. 29 7.3
AL117325-2|CAI42101.1| 595|Homo sapiens premature ovarian failu... 29 7.3
AL117325-1|CAI42100.1| 589|Homo sapiens premature ovarian failu... 29 7.3
AK025039-1|BAB15055.1| 306|Homo sapiens protein ( Homo sapiens ... 29 7.3
BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open read... 29 9.7
AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open read... 29 9.7
AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open read... 29 9.7
AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open read... 29 9.7
AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open read... 29 9.7
AF309774-1|AAM93270.1| 589|Homo sapiens premature ovarian failu... 29 9.7
>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
dynein type 11 protein.
Length = 4523
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -2
Query: 219 YKDFNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECL 40
Y ++L + K K +SYFP+ K+I +A++ D++ R + +H +CL
Sbjct: 292 YDQLQAPVVLKMVKILTTKQSSYFPTLKDIF-LAVENALLEAQDVELYLRPLRRHI-QCL 349
Query: 39 ENLDNPVT 16
+ + P T
Sbjct: 350 QETEFPQT 357
>AC102952-1|AAS07505.1| 453|Homo sapiens Homo sapiens dynein,
axonemal, heavy polypeptide 11 (DNAH11) protein.
Length = 453
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -2
Query: 219 YKDFNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECL 40
Y ++L + K K +SYFP+ K+I +A++ D++ R + +H +CL
Sbjct: 175 YDQLQAPVVLKMVKILTTKQSSYFPTLKDIF-LAVENALLEAQDVELYLRPLRRHI-QCL 232
Query: 39 ENLDNPVT 16
+ + P T
Sbjct: 233 QETEFPQT 240
>Z82216-2|CAI43051.1| 595|Homo sapiens premature ovarian failure,
1B protein.
Length = 595
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>Z82216-1|CAI43050.1| 589|Homo sapiens premature ovarian failure,
1B protein.
Length = 589
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>BC017500-1|AAH17500.1| 595|Homo sapiens POF1B protein protein.
Length = 595
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>AL117325-2|CAI42101.1| 595|Homo sapiens premature ovarian failure,
1B protein.
Length = 595
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>AL117325-1|CAI42100.1| 589|Homo sapiens premature ovarian failure,
1B protein.
Length = 589
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>AK025039-1|BAB15055.1| 306|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21386 fis, clone COL03414. ).
Length = 306
Score = 29.1 bits (62), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDQGCHPQAQCHHH 191
>BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1237
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 429 NNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFL 250
+ F+D+ RQ++ K + DL +I ++ + D N PT+K +Y+K++F
Sbjct: 1154 DRFIDLRKELRQILASK-----EEEDL--PSIEQLAHQIEDEEIN-PTEKPRQYLKRVFE 1205
Query: 249 RTKYMD----DSIDYKDFNR 202
+ Y ++DY +NR
Sbjct: 1206 ESIYKTLVERSTLDYLHYNR 1225
>AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 429 NNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFL 250
+ F+D+ RQ++ K + DL +I ++ + D N PT+K +Y+K++F
Sbjct: 1090 DRFIDLRKELRQILASK-----EEEDL--PSIEQLAHQIEDEEIN-PTEKPRQYLKRVFE 1141
Query: 249 RTKYMD----DSIDYKDFNR 202
+ Y ++DY +NR
Sbjct: 1142 ESIYKTLVERSTLDYLHYNR 1161
>AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 429 NNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFL 250
+ F+D+ RQ++ K + DL +I ++ + D N PT+K +Y+K++F
Sbjct: 1090 DRFIDLRKELRQILASK-----EEEDL--PSIEQLAHQIEDEEIN-PTEKPRQYLKRVFE 1141
Query: 249 RTKYMD----DSIDYKDFNR 202
+ Y ++DY +NR
Sbjct: 1142 ESIYKTLVERSTLDYLHYNR 1161
>AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 429 NNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFL 250
+ F+D+ RQ++ K + DL +I ++ + D N PT+K +Y+K++F
Sbjct: 1090 DRFIDLRKELRQILASK-----EEEDL--PSIEQLAHQIEDEEIN-PTEKPRQYLKRVFE 1141
Query: 249 RTKYMD----DSIDYKDFNR 202
+ Y ++DY +NR
Sbjct: 1142 ESIYKTLVERSTLDYLHYNR 1161
>AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.7
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 429 NNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFL 250
+ F+D+ RQ++ K + DL +I ++ + D N PT+K +Y+K++F
Sbjct: 1090 DRFIDLRKELRQILASK-----EEEDL--PSIEQLAHQIEDEEIN-PTEKPRQYLKRVFE 1141
Query: 249 RTKYMD----DSIDYKDFNR 202
+ Y ++DY +NR
Sbjct: 1142 ESIYKTLVERSTLDYLHYNR 1161
>AF309774-1|AAM93270.1| 589|Homo sapiens premature ovarian failure
1B protein protein.
Length = 589
Score = 28.7 bits (61), Expect = 9.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 165 KSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHY 52
+ + +FP I E I+++ K+N D P+A H+
Sbjct: 154 RGSHFFPGNNVIYEKTIRKVEKLNTDEGCHPQAQCHHH 191
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,215,266
Number of Sequences: 237096
Number of extensions: 1086942
Number of successful extensions: 2176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2176
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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