Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n24
(451 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 29 2.2
BT023155-1|AAY55571.1| 212|Drosophila melanogaster IP10824p pro... 27 8.8
BT001542-1|AAN71297.1| 712|Drosophila melanogaster RE10019p pro... 27 8.8
BT001537-1|AAN71292.1| 625|Drosophila melanogaster RE08405p pro... 27 8.8
AY118663-1|AAM50032.1| 625|Drosophila melanogaster SD10416p pro... 27 8.8
AY051826-1|AAK93250.1| 1328|Drosophila melanogaster LD33339p pro... 27 8.8
AE014297-1600|AAN14336.1| 550|Drosophila melanogaster CG7381-PC... 27 8.8
AE014297-1599|AAN14335.1| 625|Drosophila melanogaster CG7381-PB... 27 8.8
AE014297-1598|AAF54878.3| 712|Drosophila melanogaster CG7381-PA... 27 8.8
AE013599-1403|AAF58573.1| 2396|Drosophila melanogaster CG8877-PA... 27 8.8
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 29.5 bits (63), Expect = 2.2
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Frame = -2
Query: 438 MTSNNFVD--VDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYI 265
MTS N D + + + T ++ + ++P+ IL + + P +NY+ +
Sbjct: 37 MTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILF---PTTNEFLLHPFSENYDLL 93
Query: 264 --KKLFLRTKYMDDSIDYKD-----FNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRL 106
+KL K +I Y+D +N + LI + S+F + I + +++
Sbjct: 94 LGRKLLAEAKA---TISYRDQEVTLYNNKYKLI--EGIATHEQSHFQNVNMIPDTMLRQP 148
Query: 105 NKINPDLKSSPRAMLQHYN 49
NKI+P L+S L+H N
Sbjct: 149 NKISPILESD-LYRLEHLN 166
>BT023155-1|AAY55571.1| 212|Drosophila melanogaster IP10824p
protein.
Length = 212
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 294 EPTQKNYEYIKKLFLRTKYMDDSIDYKD 211
EP + I KL+ RTKY ++ I YK+
Sbjct: 173 EPNAEEQSLIYKLYKRTKYQNNYIFYKN 200
>BT001542-1|AAN71297.1| 712|Drosophila melanogaster RE10019p
protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 427 QLTKTCNCQKNYFYERD 443
>BT001537-1|AAN71292.1| 625|Drosophila melanogaster RE08405p
protein.
Length = 625
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 340 QLTKTCNCQKNYFYERD 356
>AY118663-1|AAM50032.1| 625|Drosophila melanogaster SD10416p
protein.
Length = 625
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 340 QLTKTCNCQKNYFYERD 356
>AY051826-1|AAK93250.1| 1328|Drosophila melanogaster LD33339p
protein.
Length = 1328
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -2
Query: 255 FLRTKYMDDSIDYKDF--NRRILLIVFKFALNKSASY---FPSYKEIIEVAIKRLNKINP 91
+ R K++D + D + +LI A N ++Y FP K +I+ A+ ++ K NP
Sbjct: 671 YARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGCKTLIQQAMAKIMKANP 730
Query: 90 DL 85
L
Sbjct: 731 AL 732
>AE014297-1600|AAN14336.1| 550|Drosophila melanogaster CG7381-PC,
isoform C protein.
Length = 550
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 265 QLTKTCNCQKNYFYERD 281
>AE014297-1599|AAN14335.1| 625|Drosophila melanogaster CG7381-PB,
isoform B protein.
Length = 625
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 340 QLTKTCNCQKNYFYERD 356
>AE014297-1598|AAF54878.3| 712|Drosophila melanogaster CG7381-PA,
isoform A protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 290 QLKKTMNTLKNYFYEQN 240
QL KT N KNYFYE++
Sbjct: 427 QLTKTCNCQKNYFYERD 443
>AE013599-1403|AAF58573.1| 2396|Drosophila melanogaster CG8877-PA
protein.
Length = 2396
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -2
Query: 255 FLRTKYMDDSIDYKDF--NRRILLIVFKFALNKSASY---FPSYKEIIEVAIKRLNKINP 91
+ R K++D + D + +LI A N ++Y FP K +I+ A+ ++ K NP
Sbjct: 1739 YARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGCKTLIQQAMAKIMKANP 1798
Query: 90 DL 85
L
Sbjct: 1799 AL 1800
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,225
Number of Sequences: 53049
Number of extensions: 361199
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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