Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11n24
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    28   2.7  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    27   4.8  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    27   4.8  
AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.     27   4.8  
U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL034489-4|CAA22466.1|  130|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 432 SNNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARD--RYFNEPTQKNYEYI 265
           + NF D D F +Q +TDKC  L++       N+ E+ E+      YF +P  K  + +
Sbjct: 216 TGNFNDYD-FVKQWVTDKCIPLVREVTF--ENVEELTEEGMPFLIYFRDPDNKTTDKV 270


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 309 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 133
           D   N+PT K    +KK  L+   ++ ++   D  ++I+     K++    AS  P   E
Sbjct: 281 DAISNQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340

Query: 132 IIEVAIKR 109
           I EV +K+
Sbjct: 341 IPEVEVKK 348


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 259 FFNVFIVFLSWLIKIPVSGLFYNL*NV---CRQQIRIFD 366
           F+ VF++++ WL+ +   G+FY         R++I  FD
Sbjct: 282 FYKVFLIWIPWLLLMKRPGVFYKKRRATVQAREEISFFD 320


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 30  LDFPSIHCNAEALRAENSLNR 92
           LDFPS+   AEALR+++S  R
Sbjct: 132 LDFPSVISEAEALRSQDSETR 152


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 30  LDFPSIHCNAEALRAENSLNR 92
           LDFPS+   AEALR+++S  R
Sbjct: 132 LDFPSVISEAEALRSQDSETR 152


>AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.
          Length = 964

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 309 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 133
           D   ++PT K    +KK  L+   ++ ++   D  ++I+     K++    AS  P   E
Sbjct: 281 DAISHQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340

Query: 132 IIEVAIKR 109
           I EV +K+
Sbjct: 341 IPEVEVKK 348


>U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical
           protein B0222.3 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 277 VFLSWLIKIPVSGL 318
           +F+SW+I +PVSGL
Sbjct: 467 IFMSWVITLPVSGL 480


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
           protein T08G3.7 protein.
          Length = 943

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -2

Query: 435 TSNNFVDVDTFARQLITDKCSALIKNADLLPANILEI--VEKARDRYFNEPTQKNYEY 268
           T N  V  D  AR +  D    +    D L  N      V+   +RYF E T  +Y Y
Sbjct: 196 TMNFMVFPDIPARDVFRDNSRKVYWTLDKLKVNASNAITVKNTLERYFKEMTYNSYNY 253


>AL034489-4|CAA22466.1|  130|Caenorhabditis elegans Hypothetical
           protein Y7A5A.6 protein.
          Length = 130

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 317 RPETGILMSQLKKTMNTLKNYFYEQNTW 234
           R E  +L+ Q+ + M  LKN F + N W
Sbjct: 17  RNEAELLVKQIDEAMEYLKNTFADYNHW 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,098
Number of Sequences: 27780
Number of extensions: 204628
Number of successful extensions: 573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)