Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11n24
(451 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 25 0.29
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.0
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 6.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 6.2
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 21 8.2
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 8.2
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 8.2
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 25.4 bits (53), Expect = 0.29
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 310 SGLFYNL*NVCRQQIRIFD*STTFICNQL 396
SGL N+ +VC Q+ +FD +T+ + Q+
Sbjct: 138 SGLINNVRSVCPPQLLVFDLNTSQLLKQV 166
Score = 22.2 bits (45), Expect = 2.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 276 YEYIKKLFLRTKYMDDSIDYKDFNRRILL 190
YEY+ + R + + D+ D N RIL+
Sbjct: 373 YEYVLAVSNRIQKVIYGFDFNDVNFRILI 401
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 186 VFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDN 25
+FK + F + I VA ++ + NPD K +L +YN + + N
Sbjct: 1 MFKMQILTLGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN 54
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.0 bits (42), Expect = 6.2
Identities = 11/50 (22%), Positives = 20/50 (40%)
Frame = +2
Query: 302 YLSLAFSTISKMFAGNRSAFLIRALHLSVISCLANVSTSTKLLEVIMFHF 451
Y F ++ + LI HL + ++ +T+L E + HF
Sbjct: 198 YKVTGFEELAYKMGLESTCTLILGRHLGFLKPDSSSELATRLAEAVRIHF 247
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.0 bits (42), Expect = 6.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 132 IIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDN 25
II + R+ NPD K +L +YN + + N
Sbjct: 6 IILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSN 41
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 303 YFNEPTQKNYEYIKKLFLRTKYMD 232
Y N NY KKL+ Y++
Sbjct: 94 YNNYNNNNNYNNYKKLYYNINYIE 117
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,673
Number of Sequences: 438
Number of extensions: 2295
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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